{"id":"https://openalex.org/W2418912368","doi":"https://doi.org/10.1007/978-1-60761-444-9_24","title":"Proteomics Data Collection (ProDaC): Publishing and Collecting Proteomics Data Sets in Public Repositories Using Standard Formats","display_name":"Proteomics Data Collection (ProDaC): Publishing and Collecting Proteomics Data Sets in Public Repositories Using Standard Formats","publication_year":2009,"publication_date":"2009-12-05","ids":{"openalex":"https://openalex.org/W2418912368","doi":"https://doi.org/10.1007/978-1-60761-444-9_24","mag":"2418912368","pmid":"https://pubmed.ncbi.nlm.nih.gov/20013383"},"language":"en","primary_location":{"id":"doi:10.1007/978-1-60761-444-9_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-60761-444-9_24","pdf_url":null,"source":{"id":"https://openalex.org/S4210172139","display_name":"Methods in molecular biology","issn_l":"1064-3745","issn":["1064-3745","1940-6029"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Molecular Biology","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Christian Stephan","orcid":null},"institutions":[{"id":"https://openalex.org/I904495901","display_name":"Ruhr University Bochum","ror":"https://ror.org/04tsk2644","country_code":"DE","type":"education","lineage":["https://openalex.org/I904495901"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christian Stephan","raw_affiliation_strings":["Medizinisches Proteom-Center (MPC), Ruhr-Universitaet Bochum, Bochum, Germany"],"affiliations":[{"raw_affiliation_string":"Medizinisches Proteom-Center (MPC), Ruhr-Universitaet Bochum, Bochum, Germany","institution_ids":["https://openalex.org/I904495901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087611420","display_name":"Martin Eisenacher","orcid":"https://orcid.org/0000-0003-2687-7444"},"institutions":[{"id":"https://openalex.org/I904495901","display_name":"Ruhr University Bochum","ror":"https://ror.org/04tsk2644","country_code":"DE","type":"education","lineage":["https://openalex.org/I904495901"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Eisenacher","raw_affiliation_strings":["Medizinisches Proteom-Center (MPC), Ruhr-Universitaet Bochum, Bochum, Germany"],"affiliations":[{"raw_affiliation_string":"Medizinisches Proteom-Center (MPC), Ruhr-Universitaet Bochum, Bochum, Germany","institution_ids":["https://openalex.org/I904495901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102731914","display_name":"Michael Kohl","orcid":"https://orcid.org/0000-0003-4498-178X"},"institutions":[{"id":"https://openalex.org/I904495901","display_name":"Ruhr University Bochum","ror":"https://ror.org/04tsk2644","country_code":"DE","type":"education","lineage":["https://openalex.org/I904495901"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Kohl","raw_affiliation_strings":["Medizinisches Proteom-Center (MPC), Ruhr-Universitaet Bochum, Bochum, Germany"],"affiliations":[{"raw_affiliation_string":"Medizinisches Proteom-Center (MPC), Ruhr-Universitaet Bochum, Bochum, Germany","institution_ids":["https://openalex.org/I904495901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076135264","display_name":"Helmut E. Meyer","orcid":"https://orcid.org/0000-0002-3262-8260"},"institutions":[{"id":"https://openalex.org/I904495901","display_name":"Ruhr University Bochum","ror":"https://ror.org/04tsk2644","country_code":"DE","type":"education","lineage":["https://openalex.org/I904495901"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Helmut E. Meyer","raw_affiliation_strings":["Medizinisches Proteom-Center (MPC), Ruhr-Universitaet Bochum, Bochum, Germany"],"affiliations":[{"raw_affiliation_string":"Medizinisches Proteom-Center (MPC), Ruhr-Universitaet Bochum, Bochum, Germany","institution_ids":["https://openalex.org/I904495901"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I904495901"],"apc_list":null,"apc_paid":null,"fwci":1.9023,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.88057445,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"604","issue":null,"first_page":"345","last_page":"368"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7068443298339844},{"id":"https://openalex.org/keywords/data-collection","display_name":"Data collection","score":0.5801100134849548},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5634443163871765},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.5232535600662231},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48536694049835205},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.48209598660469055},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.44978535175323486},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.44302356243133545},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.42500990629196167},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4114784896373749},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.28998708724975586},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08074665069580078}],"concepts":[{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7068443298339844},{"id":"https://openalex.org/C133462117","wikidata":"https://www.wikidata.org/wiki/Q4929239","display_name":"Data collection","level":2,"score":0.5801100134849548},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5634443163871765},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.5232535600662231},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48536694049835205},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.48209598660469055},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.44978535175323486},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.44302356243133545},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.42500990629196167},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4114784896373749},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.28998708724975586},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08074665069580078},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D005062","descriptor_name":"European Union","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005062","descriptor_name":"European Union","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005062","descriptor_name":"European Union","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/978-1-60761-444-9_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-60761-444-9_24","pdf_url":null,"source":{"id":"https://openalex.org/S4210172139","display_name":"Methods in molecular biology","issn_l":"1064-3745","issn":["1064-3745","1940-6029"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Molecular Biology","raw_type":"book-chapter"},{"id":"pmid:20013383","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20013383","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in molecular biology (Clifton, N.J.)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.5799999833106995}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1508997485","https://openalex.org/W1857092603","https://openalex.org/W1871852719","https://openalex.org/W1898460957","https://openalex.org/W1952346117","https://openalex.org/W1966060799","https://openalex.org/W1991720590","https://openalex.org/W2002429546","https://openalex.org/W2006092989","https://openalex.org/W2006875881","https://openalex.org/W2017066391","https://openalex.org/W2017119776","https://openalex.org/W2033337013","https://openalex.org/W2044893303","https://openalex.org/W2046872827","https://openalex.org/W2057761395","https://openalex.org/W2062560034","https://openalex.org/W2067299147","https://openalex.org/W2084632249","https://openalex.org/W2089364200","https://openalex.org/W2093803033","https://openalex.org/W2101656127","https://openalex.org/W2104764521","https://openalex.org/W2109993774","https://openalex.org/W2113153354","https://openalex.org/W2116862364","https://openalex.org/W2138010846","https://openalex.org/W2141491280","https://openalex.org/W2161811833","https://openalex.org/W2166469913","https://openalex.org/W2171681325","https://openalex.org/W2343832737","https://openalex.org/W4242769232","https://openalex.org/W4250839450"],"related_works":["https://openalex.org/W1799089791","https://openalex.org/W3160546064","https://openalex.org/W2895127755","https://openalex.org/W2748482055","https://openalex.org/W4206499307","https://openalex.org/W2515962581","https://openalex.org/W2551101717","https://openalex.org/W4384517881","https://openalex.org/W172560184","https://openalex.org/W2220703793"],"abstract_inverted_index":{"In":[0],"Proteomics,":[1],"fast":[2],"enhancements":[3],"with":[4],"regard":[5],"to":[6,38],"technology":[7],"are":[8,117],"responsible":[9],"for":[10,85],"the":[11,20,33,52,73,107,110,114,120],"creation":[12],"of":[13,49,54,60,68,109],"huge":[14],"data":[15,42,45,63],"sets.":[16],"Consequently,":[17],"in":[18,78,119],"2006":[19],"European":[21],"Commission":[22],"funded":[23],"a":[24,40,61],"Coordination":[25],"Action":[26],"named":[27],"ProDaC":[28,50],"(Proteomics":[29],"Data":[30,87,91,97,102],"Collection)":[31],"within":[32],"6th":[34],"EU":[35],"Framework":[36],"Programme":[37],"foster":[39],"community-wide":[41],"collection":[43,67],"and":[44,56,66,100,113],"sharing.":[46],"The":[47,104],"aims":[48],"were":[51],"development":[53],"documentation":[55],"storage":[57],"standards,":[58],"setup":[59],"standardized":[62],"submission":[64],"pipeline":[65],"data.To":[69],"reach":[70],"these":[71],"goals,":[72],"necessary":[74],"work":[75],"was":[76],"structured":[77],"six":[79],"thematic":[80],"fields":[81,112],"(work":[82],"packages):":[83],"Standards":[84,89],"Proteomics":[86,94,101],"Representation,":[88],"Implementation,":[90],"Integration":[92],"Tools,":[93],"Repository":[95],"Adaptation,":[96],"Flow":[98],"Management,":[99],"Exploitation.":[103],"methods":[105],"building":[106],"basis":[108],"respective":[111],"achieved":[115],"results":[116],"described":[118],"following":[121],"sections.":[122]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}