{"id":"https://openalex.org/W2979002843","doi":"https://doi.org/10.1007/978-1-4939-9873-9_5","title":"Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching","display_name":"Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching","publication_year":2019,"publication_date":"2019-10-03","ids":{"openalex":"https://openalex.org/W2979002843","doi":"https://doi.org/10.1007/978-1-4939-9873-9_5","mag":"2979002843","pmid":"https://pubmed.ncbi.nlm.nih.gov/31583630"},"language":"en","primary_location":{"id":"doi:10.1007/978-1-4939-9873-9_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-4939-9873-9_5","pdf_url":null,"source":{"id":"https://openalex.org/S4210172139","display_name":"Methods in molecular biology","issn_l":"1064-3745","issn":["1064-3745","1940-6029"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Molecular Biology","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038372751","display_name":"Thomas Gueudr\u00e9","orcid":"https://orcid.org/0000-0001-9462-3679"},"institutions":[{"id":"https://openalex.org/I4210123319","display_name":"Italian institute for Genomic Medicine","ror":"https://ror.org/036054d36","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210123319"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Thomas Gueudr\u00e9","raw_affiliation_strings":["Italian Institute for Genomic Medicine, Turin, Italy"],"affiliations":[{"raw_affiliation_string":"Italian Institute for Genomic Medicine, Turin, Italy","institution_ids":["https://openalex.org/I4210123319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028083013","display_name":"Carlo Baldassi","orcid":"https://orcid.org/0000-0002-5451-8388"},"institutions":[{"id":"https://openalex.org/I71209653","display_name":"Bocconi University","ror":"https://ror.org/05crjpb27","country_code":"IT","type":"education","lineage":["https://openalex.org/I71209653"]},{"id":"https://openalex.org/I4210099850","display_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Torino","ror":"https://ror.org/01vj6ck58","country_code":"IT","type":"facility","lineage":["https://openalex.org/I160013858","https://openalex.org/I4210099850"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Carlo Baldassi","raw_affiliation_strings":["Bocconi Institute for Data Science and Analytics, Bocconi University, Milan, Italy","INFN, Sezione di Torino, Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Bocconi Institute for Data Science and Analytics, Bocconi University, Milan, Italy","institution_ids":["https://openalex.org/I71209653"]},{"raw_affiliation_string":"INFN, Sezione di Torino, Torino, Italy","institution_ids":["https://openalex.org/I4210099850"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011435835","display_name":"Andrea Pagnani","orcid":"https://orcid.org/0000-0002-6509-0807"},"institutions":[{"id":"https://openalex.org/I177477856","display_name":"Polytechnic University of Turin","ror":"https://ror.org/00bgk9508","country_code":"IT","type":"education","lineage":["https://openalex.org/I177477856"]},{"id":"https://openalex.org/I4210099850","display_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Torino","ror":"https://ror.org/01vj6ck58","country_code":"IT","type":"facility","lineage":["https://openalex.org/I160013858","https://openalex.org/I4210099850"]},{"id":"https://openalex.org/I4210123319","display_name":"Italian institute for Genomic Medicine","ror":"https://ror.org/036054d36","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210123319"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Pagnani","raw_affiliation_strings":["Dipartimento di Scienza Applicata e Tecnologia, Politecnico di Torino, Torino, Italy","INFN, Sezione di Torino, Torino, Italy","Italian Institute for Genomic Medicine, Turin, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienza Applicata e Tecnologia, Politecnico di Torino, Torino, Italy","institution_ids":["https://openalex.org/I177477856"]},{"raw_affiliation_string":"INFN, Sezione di Torino, Torino, Italy","institution_ids":["https://openalex.org/I4210099850"]},{"raw_affiliation_string":"Italian Institute for Genomic Medicine, Turin, Italy","institution_ids":["https://openalex.org/I4210123319"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035771024","display_name":"Martin Weigt","orcid":"https://orcid.org/0000-0002-0492-3684"},"institutions":[{"id":"https://openalex.org/I4210107326","display_name":"Institut de Biologie Paris-Seine","ror":"https://ror.org/01c2cjg59","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210107326"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210097156","display_name":"Laboratoire de Biologie Computationnelle et Quantitative","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Martin Weigt","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative-LCQB, Paris, France. martin.weigt@upmc.fr","Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative\u2014LCQB, Paris, France"],"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative-LCQB, Paris, France. martin.weigt@upmc.fr","institution_ids":[]},{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative\u2014LCQB, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I4210107326","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035771024"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I4210107326"],"apc_list":null,"apc_paid":null,"fwci":0.3234,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.61399205,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2074","issue":null,"first_page":"57","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coevolution","display_name":"Coevolution","score":0.8412413597106934},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5801325440406799},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.547463595867157},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.5074941515922546},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.49163323640823364},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.47497743368148804},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.466470330953598},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4257705509662628},{"id":"https://openalex.org/keywords/protein-family","display_name":"Protein family","score":0.41153645515441895},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08904197812080383}],"concepts":[{"id":"https://openalex.org/C33009525","wikidata":"https://www.wikidata.org/wiki/Q208841","display_name":"Coevolution","level":2,"score":0.8412413597106934},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5801325440406799},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.547463595867157},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.5074941515922546},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.49163323640823364},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.47497743368148804},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.466470330953598},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4257705509662628},{"id":"https://openalex.org/C171897839","wikidata":"https://www.wikidata.org/wiki/Q417841","display_name":"Protein family","level":3,"score":0.41153645515441895},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08904197812080383},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/978-1-4939-9873-9_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-4939-9873-9_5","pdf_url":null,"source":{"id":"https://openalex.org/S4210172139","display_name":"Methods in molecular biology","issn_l":"1064-3745","issn":["1064-3745","1940-6029"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Molecular Biology","raw_type":"book-chapter"},{"id":"pmid:31583630","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31583630","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in molecular biology (Clifton, N.J.)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1983995085","https://openalex.org/W1990315216","https://openalex.org/W2001457899","https://openalex.org/W2057885377","https://openalex.org/W2107424557","https://openalex.org/W2109715166","https://openalex.org/W2124567458","https://openalex.org/W2152568394","https://openalex.org/W2340616476","https://openalex.org/W2342766640","https://openalex.org/W2378867027","https://openalex.org/W2593641128","https://openalex.org/W2766246727","https://openalex.org/W3100163799","https://openalex.org/W4252706339"],"related_works":["https://openalex.org/W2142431990","https://openalex.org/W1597399711","https://openalex.org/W2139846551","https://openalex.org/W2125107234","https://openalex.org/W2171695241","https://openalex.org/W2332907091","https://openalex.org/W2093176106","https://openalex.org/W2765585254","https://openalex.org/W2139240863","https://openalex.org/W2144482528"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
