{"id":"https://openalex.org/W2293111751","doi":"https://doi.org/10.1007/978-1-4471-5298-9_7","title":"Rearrangements in Phylogenetic Inference: Compare, Model, or Encode?","display_name":"Rearrangements in Phylogenetic Inference: Compare, Model, or Encode?","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2293111751","doi":"https://doi.org/10.1007/978-1-4471-5298-9_7","mag":"2293111751"},"language":"en","primary_location":{"id":"doi:10.1007/978-1-4471-5298-9_7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-4471-5298-9_7","pdf_url":null,"source":{"id":"https://openalex.org/S4210239436","display_name":"Computational biology","issn_l":"1568-2684","issn":["1568-2684","2662-2432"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320108","host_organization_name":"Springer Nature (Netherlands)","host_organization_lineage":["https://openalex.org/P4310320108","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature (Netherlands)","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://infoscience.epfl.ch/record/187479","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059287546","display_name":"Bernard M. E. Moret","orcid":"https://orcid.org/0000-0003-1549-4544"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Bernard M. E. Moret","raw_affiliation_strings":["Laboratory for Computational Biology and Bioinformatics, EPFL, EPFL-IC-LCBB INJ230, Station 14, 1015, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Computational Biology and Bioinformatics, EPFL, EPFL-IC-LCBB INJ230, Station 14, 1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079714822","display_name":"Yu Lin","orcid":"https://orcid.org/0000-0001-6339-2644"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Yu Lin","raw_affiliation_strings":["Laboratory for Computational Biology and Bioinformatics, EPFL, EPFL-IC-LCBB INJ230, Station 14, 1015, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Computational Biology and Bioinformatics, EPFL, EPFL-IC-LCBB INJ230, Station 14, 1015, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001619694","display_name":"Jijun Tang","orcid":"https://orcid.org/0000-0002-6377-536X"},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jijun Tang","raw_affiliation_strings":["Department of Computer Science and Engineering, University of South Carolina, Columbia, SC, 29208, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Carolina, Columbia, SC, 29208, USA","institution_ids":["https://openalex.org/I155781252"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5059287546"],"corresponding_institution_ids":["https://openalex.org/I5124864"],"apc_list":null,"apc_paid":null,"fwci":4.9446,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.95436767,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"147","last_page":"171"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9812999963760376,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/maximum-parsimony","display_name":"Maximum parsimony","score":0.7385681867599487},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7095831036567688},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6080628037452698},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.48343905806541443},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.4263022541999817},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4177371859550476},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3615249991416931},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35430586338043213},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3535197377204895},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24357005953788757},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22777146100997925},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0998116135597229}],"concepts":[{"id":"https://openalex.org/C22799545","wikidata":"https://www.wikidata.org/wiki/Q1805805","display_name":"Maximum parsimony","level":5,"score":0.7385681867599487},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7095831036567688},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6080628037452698},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.48343905806541443},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.4263022541999817},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4177371859550476},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3615249991416931},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35430586338043213},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3535197377204895},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24357005953788757},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22777146100997925},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0998116135597229},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-1-4471-5298-9_7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-4471-5298-9_7","pdf_url":null,"source":{"id":"https://openalex.org/S4210239436","display_name":"Computational biology","issn_l":"1568-2684","issn":["1568-2684","2662-2432"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320108","host_organization_name":"Springer Nature (Netherlands)","host_organization_lineage":["https://openalex.org/P4310320108","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature (Netherlands)","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology","raw_type":"book-chapter"},{"id":"pmh:oai:infoscience.tind.io:187479","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/187479","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://infoscience.epfl.ch/record/187479","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:infoscience.tind.io:187479","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/187479","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://infoscience.epfl.ch/record/187479","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":117,"referenced_works":["https://openalex.org/W67361246","https://openalex.org/W74509308","https://openalex.org/W112156045","https://openalex.org/W152315924","https://openalex.org/W164099422","https://openalex.org/W206494857","https://openalex.org/W602132365","https://openalex.org/W649798380","https://openalex.org/W1491688952","https://openalex.org/W1506292197","https://openalex.org/W1507091143","https://openalex.org/W1530804984","https://openalex.org/W1547622250","https://openalex.org/W1555623370","https://openalex.org/W1566359724","https://openalex.org/W1569808656","https://openalex.org/W1572531572","https://openalex.org/W1582154576","https://openalex.org/W1585881831","https://openalex.org/W1587567223","https://openalex.org/W1589174490","https://openalex.org/W1592788845","https://openalex.org/W1594983821","https://openalex.org/W1603144785","https://openalex.org/W1615412140","https://openalex.org/W1753671966","https://openalex.org/W1756319644","https://openalex.org/W1794479819","https://openalex.org/W1812191300","https://openalex.org/W1834619628","https://openalex.org/W1916095128","https://openalex.org/W1958274537","https://openalex.org/W1967455988","https://openalex.org/W1971383554","https://openalex.org/W1974676566","https://openalex.org/W1977280548","https://openalex.org/W1981231088","https://openalex.org/W1985484376","https://openalex.org/W1985530443","https://openalex.org/W2008047531","https://openalex.org/W2020350008","https://openalex.org/W2021416330","https://openalex.org/W2025268107","https://openalex.org/W2026452889","https://openalex.org/W2029423003","https://openalex.org/W2029878366","https://openalex.org/W2029943378","https://openalex.org/W2035933706","https://openalex.org/W2039843238","https://openalex.org/W2041612616","https://openalex.org/W2041797002","https://openalex.org/W2043207852","https://openalex.org/W2045017146","https://openalex.org/W2049796549","https://openalex.org/W2055375449","https://openalex.org/W2058473329","https://openalex.org/W2060973867","https://openalex.org/W2063731178","https://openalex.org/W2065691269","https://openalex.org/W2065973977","https://openalex.org/W2066173565","https://openalex.org/W2068396445","https://openalex.org/W2081587458","https://openalex.org/W2082638565","https://openalex.org/W2090074287","https://openalex.org/W2091943445","https://openalex.org/W2093342565","https://openalex.org/W2095815023","https://openalex.org/W2097082463","https://openalex.org/W2097706568","https://openalex.org/W2099956347","https://openalex.org/W2100238496","https://openalex.org/W2100665964","https://openalex.org/W2101458278","https://openalex.org/W2102813451","https://openalex.org/W2103849916","https://openalex.org/W2105329815","https://openalex.org/W2113035810","https://openalex.org/W2116697038","https://openalex.org/W2119500092","https://openalex.org/W2120819924","https://openalex.org/W2121004530","https://openalex.org/W2121253966","https://openalex.org/W2122004093","https://openalex.org/W2122903088","https://openalex.org/W2124862004","https://openalex.org/W2126769883","https://openalex.org/W2129212865","https://openalex.org/W2130849966","https://openalex.org/W2132972885","https://openalex.org/W2133090982","https://openalex.org/W2138113165","https://openalex.org/W2143335572","https://openalex.org/W2148794854","https://openalex.org/W2149628296","https://openalex.org/W2151229046","https://openalex.org/W2151546479","https://openalex.org/W2152404552","https://openalex.org/W2153520172","https://openalex.org/W2155865869","https://openalex.org/W2156923845","https://openalex.org/W2157312689","https://openalex.org/W2160045133","https://openalex.org/W2160389343","https://openalex.org/W2161131715","https://openalex.org/W2161192208","https://openalex.org/W2163165362","https://openalex.org/W2163443324","https://openalex.org/W2166494661","https://openalex.org/W2168696662","https://openalex.org/W2178441316","https://openalex.org/W2282054059","https://openalex.org/W2763373928","https://openalex.org/W2911804362","https://openalex.org/W2944768395","https://openalex.org/W3031193760","https://openalex.org/W4213205621"],"related_works":["https://openalex.org/W1999357269","https://openalex.org/W60729751","https://openalex.org/W2367132310","https://openalex.org/W1679582220","https://openalex.org/W4236476334","https://openalex.org/W3202918788","https://openalex.org/W3138878592","https://openalex.org/W4237173191","https://openalex.org/W2085975311","https://openalex.org/W4282933941"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
