{"id":"https://openalex.org/W4396966059","doi":"https://doi.org/10.1007/978-1-0716-3989-4_39","title":"Enhancing Gene Set Analysis in\u00a0Embedding Spaces: A Novel Best-Match Approach","display_name":"Enhancing Gene Set Analysis in\u00a0Embedding Spaces: A Novel Best-Match Approach","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4396966059","doi":"https://doi.org/10.1007/978-1-0716-3989-4_39"},"language":"en","primary_location":{"id":"doi:10.1007/978-1-0716-3989-4_39","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-0716-3989-4_39","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045303258","display_name":"Lechuan Li","orcid":"https://orcid.org/0000-0001-9652-7074"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lechuan Li","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062194243","display_name":"Ruth Dannenfelser","orcid":"https://orcid.org/0000-0002-8766-6424"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruth Dannenfelser","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109717029","display_name":"Charlie Cruz","orcid":null},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charlie Cruz","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006247664","display_name":"Vicky Yao","orcid":"https://orcid.org/0000-0002-3201-9983"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vicky Yao","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, USA","institution_ids":["https://openalex.org/I74775410"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5045303258"],"corresponding_institution_ids":["https://openalex.org/I74775410"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15546321,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"396","last_page":"399"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8185528516769409},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6858748197555542},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5554206371307373},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.42285558581352234},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3592965602874756},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3367929458618164},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15125736594200134}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8185528516769409},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6858748197555542},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5554206371307373},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.42285558581352234},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3592965602874756},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3367929458618164},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15125736594200134}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-1-0716-3989-4_39","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-0716-3989-4_39","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1981409633","https://openalex.org/W2084533385","https://openalex.org/W2130410032","https://openalex.org/W2153848946","https://openalex.org/W2512518468","https://openalex.org/W2615066396","https://openalex.org/W2800388620","https://openalex.org/W2807792492","https://openalex.org/W2823486014","https://openalex.org/W2897771749","https://openalex.org/W2954492537","https://openalex.org/W2994901719","https://openalex.org/W3014321973","https://openalex.org/W3039150496","https://openalex.org/W3093030756","https://openalex.org/W3120798591","https://openalex.org/W3164046276","https://openalex.org/W4220824576","https://openalex.org/W4236358448","https://openalex.org/W4327550249","https://openalex.org/W4386195729","https://openalex.org/W6828597279"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2081900870","https://openalex.org/W2073681303","https://openalex.org/W2345479200","https://openalex.org/W2183306018","https://openalex.org/W2053286651","https://openalex.org/W2849310602","https://openalex.org/W3006008237","https://openalex.org/W2181743346","https://openalex.org/W2932872266"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
