{"id":"https://openalex.org/W4396966237","doi":"https://doi.org/10.1007/978-1-0716-3989-4_33","title":"Mapping the\u00a0Topography of\u00a0Spatial Gene Expression with\u00a0Interpretable Deep Learning","display_name":"Mapping the\u00a0Topography of\u00a0Spatial Gene Expression with\u00a0Interpretable Deep Learning","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4396966237","doi":"https://doi.org/10.1007/978-1-0716-3989-4_33"},"language":"en","primary_location":{"id":"doi:10.1007/978-1-0716-3989-4_33","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-0716-3989-4_33","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007866726","display_name":"Uthsav Chitra","orcid":"https://orcid.org/0000-0001-6016-0960"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Uthsav Chitra","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021604866","display_name":"Brian J. Arnold","orcid":"https://orcid.org/0000-0002-8629-5465"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian J. Arnold","raw_affiliation_strings":["Center for Statistics and Machine Learning, Princeton University, Princeton, NJ, USA","Department of Computer Science, Princeton University, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Center for Statistics and Machine Learning, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040245011","display_name":"Hirak Sarkar","orcid":"https://orcid.org/0000-0003-3636-7384"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hirak Sarkar","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, USA","Ludwig Cancer Institute, Princeton Branch, Princeton University, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Ludwig Cancer Institute, Princeton Branch, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103175478","display_name":"Cong Ma","orcid":"https://orcid.org/0000-0003-4300-2754"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cong Ma","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079324027","display_name":"Sereno Lopez-Darwin","orcid":null},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sereno Lopez-Darwin","raw_affiliation_strings":["Lewis-Sigler Institute, Princeton University, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Lewis-Sigler Institute, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093064159","display_name":"Kohei Sanno","orcid":null},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kohei Sanno","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025899028","display_name":"Benjamin J. Raphael","orcid":"https://orcid.org/0000-0003-1274-048X"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin J. Raphael","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5007866726"],"corresponding_institution_ids":["https://openalex.org/I20089843"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":7.6369,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.97311171,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"368","last_page":"371"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.967199981212616,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7304352521896362},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6272350549697876},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5177716016769409},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3618347942829132},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.3487532138824463},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34291142225265503},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.10192322731018066}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7304352521896362},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6272350549697876},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5177716016769409},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3618347942829132},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.3487532138824463},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34291142225265503},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.10192322731018066}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-1-0716-3989-4_33","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-0716-3989-4_33","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W2915848182","https://openalex.org/W2998065416","https://openalex.org/W3112563877","https://openalex.org/W3119379269","https://openalex.org/W3129476455","https://openalex.org/W3164156820","https://openalex.org/W3190202966","https://openalex.org/W4210853280","https://openalex.org/W4220765701","https://openalex.org/W4229033508","https://openalex.org/W4286449197","https://openalex.org/W4294053500","https://openalex.org/W4300862018","https://openalex.org/W4386740997","https://openalex.org/W4387641357"],"related_works":["https://openalex.org/W2731899572","https://openalex.org/W3215138031","https://openalex.org/W2058170566","https://openalex.org/W2755342338","https://openalex.org/W2772917594","https://openalex.org/W2775347418","https://openalex.org/W2166024367","https://openalex.org/W3009238340","https://openalex.org/W3116076068","https://openalex.org/W2229312674"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2}],"updated_date":"2026-01-26T23:06:41.788003","created_date":"2025-10-10T00:00:00"}
