{"id":"https://openalex.org/W4396966065","doi":"https://doi.org/10.1007/978-1-0716-3989-4_17","title":"Undesignable RNA Structure Identification via\u00a0Rival Structure Generation and\u00a0Structure Decomposition","display_name":"Undesignable RNA Structure Identification via\u00a0Rival Structure Generation and\u00a0Structure Decomposition","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4396966065","doi":"https://doi.org/10.1007/978-1-0716-3989-4_17"},"language":"en","primary_location":{"id":"doi:10.1007/978-1-0716-3989-4_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-0716-3989-4_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016330639","display_name":"Tianshuo Zhou","orcid":"https://orcid.org/0009-0008-4804-0825"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tianshuo Zhou","raw_affiliation_strings":["School of EECS, Oregon State University, Corvallis, OR, 97330, USA"],"raw_orcid":"https://orcid.org/0009-0008-4804-0825","affiliations":[{"raw_affiliation_string":"School of EECS, Oregon State University, Corvallis, OR, 97330, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102903659","display_name":"Wei Yu Tang","orcid":"https://orcid.org/0009-0008-1141-9479"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Yu Tang","raw_affiliation_strings":["School of EECS, Oregon State University, Corvallis, OR, 97330, USA"],"raw_orcid":"https://orcid.org/0009-0008-1141-9479","affiliations":[{"raw_affiliation_string":"School of EECS, Oregon State University, Corvallis, OR, 97330, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002272329","display_name":"David H. Mathews","orcid":"https://orcid.org/0000-0002-2907-6557"},"institutions":[{"id":"https://openalex.org/I28792581","display_name":"University of Rochester Medical Center","ror":"https://ror.org/00trqv719","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I28792581","https://openalex.org/I5388228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David H. Mathews","raw_affiliation_strings":["Center for RNA Biology, University of Rochester Medical Center, Rochester, NY, 14642, USA","Department of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY, 14642, USA","Department\u00a0of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA"],"raw_orcid":"https://orcid.org/0000-0002-2907-6557","affiliations":[{"raw_affiliation_string":"Center for RNA Biology, University of Rochester Medical Center, Rochester, NY, 14642, USA","institution_ids":["https://openalex.org/I28792581"]},{"raw_affiliation_string":"Department of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY, 14642, USA","institution_ids":["https://openalex.org/I28792581"]},{"raw_affiliation_string":"Department\u00a0of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA","institution_ids":["https://openalex.org/I28792581"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006404928","display_name":"Liang Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Liang Huang","raw_affiliation_strings":["Department of Biochemistry and Biophysics, Oregon State University, Corvallis, OR, 97330, USA","School of EECS, Oregon State University, Corvallis, OR, 97330, USA"],"raw_orcid":"https://orcid.org/0000-0001-6444-7045","affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biophysics, Oregon State University, Corvallis, OR, 97330, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"School of EECS, Oregon State University, Corvallis, OR, 97330, USA","institution_ids":["https://openalex.org/I131249849"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006404928"],"corresponding_institution_ids":["https://openalex.org/I131249849"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":7.1061,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.96922698,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"270","last_page":"287"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7464085817337036},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.5518725514411926},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5328830480575562},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.42344218492507935},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.4154089689254761},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.22143733501434326},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08716228604316711},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.054935723543167114}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7464085817337036},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.5518725514411926},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5328830480575562},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.42344218492507935},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.4154089689254761},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.22143733501434326},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08716228604316711},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.054935723543167114},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-1-0716-3989-4_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-0716-3989-4_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1543796220","https://openalex.org/W1860906034","https://openalex.org/W1980410097","https://openalex.org/W2004945910","https://openalex.org/W2009818318","https://openalex.org/W2012593394","https://openalex.org/W2055214702","https://openalex.org/W2085954575","https://openalex.org/W2086561953","https://openalex.org/W2111342151","https://openalex.org/W2118564824","https://openalex.org/W2125615424","https://openalex.org/W2135373808","https://openalex.org/W2159117141","https://openalex.org/W2276634778","https://openalex.org/W2805684679","https://openalex.org/W2807962979","https://openalex.org/W2887432069","https://openalex.org/W2954102902","https://openalex.org/W2973044881","https://openalex.org/W3004731604","https://openalex.org/W3197721376","https://openalex.org/W4283010458","https://openalex.org/W4382631633"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2024-05-17T00:00:00"}
