{"id":"https://openalex.org/W3081370688","doi":"https://doi.org/10.1007/978-1-0716-0826-5_4","title":"Computational Methods for Elucidating Gene Expression Regulation in Bacteria","display_name":"Computational Methods for Elucidating Gene Expression Regulation in Bacteria","publication_year":2020,"publication_date":"2020-08-18","ids":{"openalex":"https://openalex.org/W3081370688","doi":"https://doi.org/10.1007/978-1-0716-0826-5_4","mag":"3081370688","pmid":"https://pubmed.ncbi.nlm.nih.gov/32804362"},"language":"en","primary_location":{"id":"doi:10.1007/978-1-0716-0826-5_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-0716-0826-5_4","pdf_url":null,"source":{"id":"https://openalex.org/S4210172139","display_name":"Methods in molecular biology","issn_l":"1064-3745","issn":["1064-3745","1940-6029"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Molecular Biology","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071590321","display_name":"Kratika Naskulwar","orcid":null},"institutions":[{"id":"https://openalex.org/I130438778","display_name":"Memorial University of Newfoundland","ror":"https://ror.org/04haebc03","country_code":"CA","type":"education","lineage":["https://openalex.org/I130438778"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Kratika Naskulwar","raw_affiliation_strings":["Department of Computer Science, Memorial University of Newfoundland, St. John's, NL, Canada","Department of Computer Science, Memorial University of Newfoundland, St. John\u2019s, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Memorial University of Newfoundland, St. John's, NL, Canada","institution_ids":["https://openalex.org/I130438778"]},{"raw_affiliation_string":"Department of Computer Science, Memorial University of Newfoundland, St. John\u2019s, Canada","institution_ids":["https://openalex.org/I130438778"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008561753","display_name":"Ruben Chevez-Guardado","orcid":null},"institutions":[{"id":"https://openalex.org/I130438778","display_name":"Memorial University of Newfoundland","ror":"https://ror.org/04haebc03","country_code":"CA","type":"education","lineage":["https://openalex.org/I130438778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ruben Chevez-Guardado","raw_affiliation_strings":["Department of Computer Science, Memorial University of Newfoundland, St. John's, NL, Canada","Department of Computer Science, Memorial University of Newfoundland, St. John\u2019s, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Memorial University of Newfoundland, St. John's, NL, Canada","institution_ids":["https://openalex.org/I130438778"]},{"raw_affiliation_string":"Department of Computer Science, Memorial University of Newfoundland, St. John\u2019s, Canada","institution_ids":["https://openalex.org/I130438778"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044078900","display_name":"Lourdes Pe\u00f1a\u2010Castillo","orcid":"https://orcid.org/0000-0002-0643-2547"},"institutions":[{"id":"https://openalex.org/I130438778","display_name":"Memorial University of Newfoundland","ror":"https://ror.org/04haebc03","country_code":"CA","type":"education","lineage":["https://openalex.org/I130438778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lourdes Pe\u00f1a-Castillo","raw_affiliation_strings":["Department of Biology, Memorial University of Newfoundland, St. John's, NL, Canada. lourdes@mun.ca","Department of Computer Science, Memorial University of Newfoundland, St. John's, NL, Canada. lourdes@mun.ca","Department of Biology, Memorial University of Newfoundland, St. John\u2019s, Canada","Department of Computer Science, Memorial University of Newfoundland, St. John\u2019s, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Memorial University of Newfoundland, St. John's, NL, Canada. lourdes@mun.ca","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, Memorial University of Newfoundland, St. John's, NL, Canada. lourdes@mun.ca","institution_ids":[]},{"raw_affiliation_string":"Department of Biology, Memorial University of Newfoundland, St. John\u2019s, Canada","institution_ids":["https://openalex.org/I130438778"]},{"raw_affiliation_string":"Department of Computer Science, Memorial University of Newfoundland, St. John\u2019s, Canada","institution_ids":["https://openalex.org/I130438778"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5071590321"],"corresponding_institution_ids":["https://openalex.org/I130438778"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.17520909,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2190","issue":null,"first_page":"95","last_page":"114"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6408997178077698},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.637153148651123},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6224628686904907},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6115826964378357},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.57240229845047},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.564422070980072},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.48355647921562195},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.4433368146419525},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.41397589445114136}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6408997178077698},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.637153148651123},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6224628686904907},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6115826964378357},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.57240229845047},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.564422070980072},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48355647921562195},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.4433368146419525},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.41397589445114136},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/978-1-0716-0826-5_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-1-0716-0826-5_4","pdf_url":null,"source":{"id":"https://openalex.org/S4210172139","display_name":"Methods in molecular biology","issn_l":"1064-3745","issn":["1064-3745","1940-6029"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Molecular Biology","raw_type":"book-chapter"},{"id":"pmid:32804362","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32804362","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in molecular biology (Clifton, N.J.)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W638577851","https://openalex.org/W1534710388","https://openalex.org/W2068242488","https://openalex.org/W2083122216","https://openalex.org/W2091356219","https://openalex.org/W2101492309","https://openalex.org/W2102619694","https://openalex.org/W2103441770","https://openalex.org/W2134526812","https://openalex.org/W2137390416","https://openalex.org/W2147225758","https://openalex.org/W2165350191","https://openalex.org/W2170551349","https://openalex.org/W2171772299","https://openalex.org/W2294658832","https://openalex.org/W2316906691","https://openalex.org/W2397790962","https://openalex.org/W2468024529","https://openalex.org/W2526784604","https://openalex.org/W2605897695","https://openalex.org/W2742975915","https://openalex.org/W2783517692","https://openalex.org/W2787044201","https://openalex.org/W2791228365","https://openalex.org/W2821433317","https://openalex.org/W2889069059","https://openalex.org/W2947620157","https://openalex.org/W2951717461","https://openalex.org/W2954143028","https://openalex.org/W2963739921","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W2581702729","https://openalex.org/W2613929436","https://openalex.org/W2347793859","https://openalex.org/W3151254369","https://openalex.org/W46113340","https://openalex.org/W2016183850","https://openalex.org/W2129550547","https://openalex.org/W2175857012","https://openalex.org/W2093869340","https://openalex.org/W1493673817"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}