{"id":"https://openalex.org/W20508781","doi":"https://doi.org/10.1007/978-0-387-74759-0_250","title":"Global Pairwise Protein Sequence Alignment via Mixed-Integer Linear Optimization","display_name":"Global Pairwise Protein Sequence Alignment via Mixed-Integer Linear Optimization","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W20508781","doi":"https://doi.org/10.1007/978-0-387-74759-0_250","mag":"20508781"},"language":"en","primary_location":{"id":"doi:10.1007/978-0-387-74759-0_250","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-0-387-74759-0_250","pdf_url":null,"source":{"id":"https://openalex.org/S4306509378","display_name":"Encyclopedia of Optimization","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Encyclopedia of Optimization","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111214090","display_name":"S. R. McAllister","orcid":null},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"S. R. McAllister","raw_affiliation_strings":["Department of Chemical Engineering, Princeton University, Princeton, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Princeton University, Princeton, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049592533","display_name":"R. Rajgaria","orcid":null},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Rajgaria","raw_affiliation_strings":["Department of Chemical Engineering, Princeton University, Princeton, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Princeton University, Princeton, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050187529","display_name":"Christodoulos A. Floudas","orcid":null},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christodoulos A. Floudas","raw_affiliation_strings":["Department of Chemical Engineering, Princeton University, Princeton, NJ, 08544-5263, USA","Department of Chemical Engineering, Princeton University, Princeton, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Princeton University, Princeton, NJ, 08544-5263, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Department of Chemical Engineering, Princeton University, Princeton, USA","institution_ids":["https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5111214090"],"corresponding_institution_ids":["https://openalex.org/I20089843"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00489297,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1427","last_page":"1434"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7593021392822266},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.561920166015625},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5170648694038391},{"id":"https://openalex.org/keywords/integer","display_name":"Integer (computer science)","score":0.5092149972915649},{"id":"https://openalex.org/keywords/integer-programming","display_name":"Integer programming","score":0.4589989185333252},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4341360926628113},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4167044162750244},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3653425872325897},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.27062761783599854},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.267959862947464},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.26421260833740234},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21949318051338196},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15808144211769104},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.12185096740722656}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7593021392822266},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.561920166015625},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5170648694038391},{"id":"https://openalex.org/C97137487","wikidata":"https://www.wikidata.org/wiki/Q729138","display_name":"Integer (computer science)","level":2,"score":0.5092149972915649},{"id":"https://openalex.org/C56086750","wikidata":"https://www.wikidata.org/wiki/Q6042592","display_name":"Integer programming","level":2,"score":0.4589989185333252},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4341360926628113},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4167044162750244},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3653425872325897},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.27062761783599854},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.267959862947464},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.26421260833740234},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21949318051338196},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15808144211769104},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.12185096740722656},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-0-387-74759-0_250","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-0-387-74759-0_250","pdf_url":null,"source":{"id":"https://openalex.org/S4306509378","display_name":"Encyclopedia of Optimization","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Encyclopedia of Optimization","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1558365920","https://openalex.org/W1995431912","https://openalex.org/W2002805476","https://openalex.org/W2015292449","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2098129242","https://openalex.org/W2102328679","https://openalex.org/W2130664169","https://openalex.org/W2135580377","https://openalex.org/W2143210482","https://openalex.org/W2158714788","https://openalex.org/W4238484605"],"related_works":["https://openalex.org/W2129361631","https://openalex.org/W2952865022","https://openalex.org/W2015739358","https://openalex.org/W2371742721","https://openalex.org/W2111953528","https://openalex.org/W4206089097","https://openalex.org/W3181554305","https://openalex.org/W2351540725","https://openalex.org/W4247510436","https://openalex.org/W2990597590"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
