{"id":"https://openalex.org/W1574721051","doi":"https://doi.org/10.1007/3-540-58094-8_25","title":"Recent methods for RNA modeling using stochastic context-free grammars","display_name":"Recent methods for RNA modeling using stochastic context-free grammars","publication_year":1994,"publication_date":"1994-01-01","ids":{"openalex":"https://openalex.org/W1574721051","doi":"https://doi.org/10.1007/3-540-58094-8_25","mag":"1574721051"},"language":"en","primary_location":{"id":"doi:10.1007/3-540-58094-8_25","is_oa":false,"landing_page_url":"https://doi.org/10.1007/3-540-58094-8_25","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025573915","display_name":"Yasubumi Sakakibara","orcid":"https://orcid.org/0000-0002-6932-3452"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yasubumi Sakakibara","raw_affiliation_strings":["Computer and Information Sciences, University of California, 95064, Santa Cruz, CA, USA","University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Sciences, University of California, 95064, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021075431","display_name":"Michael P. Brown","orcid":"https://orcid.org/0000-0002-5796-1932"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Brown","raw_affiliation_strings":["Computer and Information Sciences, University of California, 95064, Santa Cruz, CA, USA","University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Sciences, University of California, 95064, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047915561","display_name":"Richard Hughey","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Hughey","raw_affiliation_strings":["Computer Engineering, University of California, 95064, Santa Cruz, CA, USA","University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Engineering, University of California, 95064, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Saira Mian","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saira Mian","raw_affiliation_strings":["Sinsheimer Laboratories, University of California, 95064, Santa Cruz, CA, USA","University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sinsheimer Laboratories, University of California, 95064, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107849607","display_name":"Kimmen Sj\u00f6lander","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kimmen Sj\u00f6lander","raw_affiliation_strings":["Computer and Information Sciences, University of California, 95064, Santa Cruz, CA, USA","University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Sciences, University of California, 95064, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018687079","display_name":"Rebecca C. Underwood","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rebecca C. Underwood","raw_affiliation_strings":["Computer and Information Sciences, University of California, 95064, Santa Cruz, CA, USA","University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Sciences, University of California, 95064, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090849321","display_name":"David Haussler","orcid":"https://orcid.org/0000-0003-1533-4575"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David Haussler","raw_affiliation_strings":["Computer and Information Sciences, University of California, 95064, Santa Cruz, CA, USA","University of California"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Sciences, University of California, 95064, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California","institution_ids":["https://openalex.org/I2803209242"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5090849321"],"corresponding_institution_ids":["https://openalex.org/I185103710","https://openalex.org/I2803209242"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":35,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"289","last_page":"306"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12072","display_name":"Machine Learning and Algorithms","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.759070873260498},{"id":"https://openalex.org/keywords/synchronous-context-free-grammar","display_name":"Synchronous context-free grammar","score":0.751702606678009},{"id":"https://openalex.org/keywords/stochastic-context-free-grammar","display_name":"Stochastic context-free grammar","score":0.7293823957443237},{"id":"https://openalex.org/keywords/rule-based-machine-translation","display_name":"Rule-based machine translation","score":0.6578692197799683},{"id":"https://openalex.org/keywords/grammar-induction","display_name":"Grammar induction","score":0.5763631463050842},{"id":"https://openalex.org/keywords/context-free-grammar","display_name":"Context-free grammar","score":0.5673481822013855},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.5651766061782837},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5535590052604675},{"id":"https://openalex.org/keywords/grammar","display_name":"Grammar","score":0.5494267344474792},{"id":"https://openalex.org/keywords/tree-adjoining-grammar","display_name":"Tree-adjoining grammar","score":0.5061835646629333},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.48291632533073425},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4817107319831848},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.42842841148376465},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4228236973285675},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4175769090652466},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3565595746040344},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3294755816459656},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13400259613990784},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.1106293797492981}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.759070873260498},{"id":"https://openalex.org/C51802942","wikidata":"https://www.wikidata.org/wiki/Q7662211","display_name":"Synchronous context-free grammar","level":4,"score":0.751702606678009},{"id":"https://openalex.org/C199624470","wikidata":"https://www.wikidata.org/wiki/Q2377216","display_name":"Stochastic context-free grammar","level":5,"score":0.7293823957443237},{"id":"https://openalex.org/C53893814","wikidata":"https://www.wikidata.org/wiki/Q7378909","display_name":"Rule-based machine translation","level":2,"score":0.6578692197799683},{"id":"https://openalex.org/C56601403","wikidata":"https://www.wikidata.org/wiki/Q5593673","display_name":"Grammar induction","level":3,"score":0.5763631463050842},{"id":"https://openalex.org/C97212296","wikidata":"https://www.wikidata.org/wiki/Q338047","display_name":"Context-free grammar","level":3,"score":0.5673481822013855},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.5651766061782837},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5535590052604675},{"id":"https://openalex.org/C26022165","wikidata":"https://www.wikidata.org/wiki/Q8091","display_name":"Grammar","level":2,"score":0.5494267344474792},{"id":"https://openalex.org/C134083981","wikidata":"https://www.wikidata.org/wiki/Q1754022","display_name":"Tree-adjoining grammar","level":4,"score":0.5061835646629333},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.48291632533073425},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4817107319831848},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.42842841148376465},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4228236973285675},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4175769090652466},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3565595746040344},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3294755816459656},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13400259613990784},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.1106293797492981},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C24687705","wikidata":"https://www.wikidata.org/wiki/Q3753284","display_name":"Example-based machine translation","level":3,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/3-540-58094-8_25","is_oa":false,"landing_page_url":"https://doi.org/10.1007/3-540-58094-8_25","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.55.9031","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.55.9031","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.cse.ucsc.edu/pub/rna/cpm94.ps.Z","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.5199999809265137}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W280694366","https://openalex.org/W602602481","https://openalex.org/W894213101","https://openalex.org/W1041549185","https://openalex.org/W1246461931","https://openalex.org/W1538896550","https://openalex.org/W1573785911","https://openalex.org/W1574109141","https://openalex.org/W1607568976","https://openalex.org/W1901672014","https://openalex.org/W1972875715","https://openalex.org/W1975482179","https://openalex.org/W1978470410","https://openalex.org/W1998894153","https://openalex.org/W2011368877","https://openalex.org/W2017302704","https://openalex.org/W2017313617","https://openalex.org/W2018283708","https://openalex.org/W2027446510","https://openalex.org/W2035020702","https://openalex.org/W2035783320","https://openalex.org/W2047706513","https://openalex.org/W2054931730","https://openalex.org/W2057850636","https://openalex.org/W2061315523","https://openalex.org/W2067665219","https://openalex.org/W2068725534","https://openalex.org/W2074584543","https://openalex.org/W2074930276","https://openalex.org/W2079969024","https://openalex.org/W2083367980","https://openalex.org/W2088528526","https://openalex.org/W2095145214","https://openalex.org/W2097168352","https://openalex.org/W2099919278","https://openalex.org/W2102122585","https://openalex.org/W2124162379","https://openalex.org/W2125838338","https://openalex.org/W2142393243","https://openalex.org/W2151538750","https://openalex.org/W2166434533","https://openalex.org/W2797692640","https://openalex.org/W2997317337","https://openalex.org/W3141335569","https://openalex.org/W3150368982","https://openalex.org/W4230118546","https://openalex.org/W4237655687","https://openalex.org/W4245826738","https://openalex.org/W4296980202","https://openalex.org/W6635067950","https://openalex.org/W6772162023"],"related_works":["https://openalex.org/W4245826738","https://openalex.org/W2049300803","https://openalex.org/W1528741793","https://openalex.org/W1570763403","https://openalex.org/W1502023054","https://openalex.org/W2138974169","https://openalex.org/W2354466765","https://openalex.org/W1574721051","https://openalex.org/W2757843075","https://openalex.org/W11862124"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
