{"id":"https://openalex.org/W2116697038","doi":"https://doi.org/10.1007/3-540-45784-4_40","title":"Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data","display_name":"Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data","publication_year":2002,"publication_date":"2002-01-01","ids":{"openalex":"https://openalex.org/W2116697038","doi":"https://doi.org/10.1007/3-540-45784-4_40","mag":"2116697038"},"language":"en","primary_location":{"id":"doi:10.1007/3-540-45784-4_40","is_oa":false,"landing_page_url":"https://doi.org/10.1007/3-540-45784-4_40","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://infoscience.epfl.ch/record/165120","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059287546","display_name":"Bernard M. E. Moret","orcid":"https://orcid.org/0000-0003-1549-4544"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bernard M. E. Moret","raw_affiliation_strings":["Department of Computer Science, University of New Mexico, 87131, Albuquerque, NM, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Mexico, 87131, Albuquerque, NM, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061240989","display_name":"Adam Siepel","orcid":"https://orcid.org/0000-0002-3557-7219"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam C. Siepel","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California at Santa Cruz, 95064, Santa Cruz, CA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California at Santa Cruz, 95064, Santa Cruz, CA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001619694","display_name":"Jijun Tang","orcid":"https://orcid.org/0000-0002-6377-536X"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jijun Tang","raw_affiliation_strings":["Department of Computer Science, University of New Mexico, 87131, Albuquerque, NM, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Mexico, 87131, Albuquerque, NM, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100338147","display_name":"Tao Liu","orcid":"https://orcid.org/0009-0006-6626-9813"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tao Liu","raw_affiliation_strings":["Department of Computer Science, University of New Mexico, 87131, Albuquerque, NM, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Mexico, 87131, Albuquerque, NM, USA","institution_ids":["https://openalex.org/I169521973"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5059287546"],"corresponding_institution_ids":["https://openalex.org/I169521973"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":17.3318,"has_fulltext":false,"cited_by_count":86,"citation_normalized_percentile":{"value":0.99189815,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"521","last_page":"536"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breakpoint","display_name":"Breakpoint","score":0.7890678644180298},{"id":"https://openalex.org/keywords/inversion","display_name":"Inversion (geology)","score":0.6646729707717896},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6011518836021423},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.518179714679718},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.47883322834968567},{"id":"https://openalex.org/keywords/median","display_name":"Median","score":0.4536551535129547},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.44098618626594543},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3791734278202057},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3280394375324249},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.326235830783844},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2975016236305237},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29209062457084656},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.25472724437713623},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19898313283920288},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1515330970287323}],"concepts":[{"id":"https://openalex.org/C206936463","wikidata":"https://www.wikidata.org/wiki/Q634179","display_name":"Breakpoint","level":4,"score":0.7890678644180298},{"id":"https://openalex.org/C1893757","wikidata":"https://www.wikidata.org/wiki/Q3653001","display_name":"Inversion (geology)","level":3,"score":0.6646729707717896},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6011518836021423},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.518179714679718},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.47883322834968567},{"id":"https://openalex.org/C156460124","wikidata":"https://www.wikidata.org/wiki/Q235001","display_name":"Median","level":2,"score":0.4536551535129547},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.44098618626594543},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3791734278202057},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3280394375324249},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.326235830783844},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2975016236305237},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29209062457084656},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.25472724437713623},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19898313283920288},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1515330970287323},{"id":"https://openalex.org/C109007969","wikidata":"https://www.wikidata.org/wiki/Q749565","display_name":"Structural basin","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C138626823","wikidata":"https://www.wikidata.org/wiki/Q916504","display_name":"Chromosomal translocation","level":3,"score":0.0}],"mesh":[],"locations_count":10,"locations":[{"id":"doi:10.1007/3-540-45784-4_40","is_oa":false,"landing_page_url":"https://doi.org/10.1007/3-540-45784-4_40","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:repository.cshl.edu:31037","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.121.5959","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.121.5959","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://compgen.bscb.cornell.edu/~acs/wabi02.ps","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.133.6969","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.133.6969","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.sc.edu/~jtang/wabi02a.ps","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.15.4346","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.15.4346","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.unm.edu/~moret/moret-siepel_wabi02.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.156.1090","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.156.1090","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.sc.edu/~jtang/wabi02a.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.389.5501","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.389.5501","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.utexas.edu/~phylo/resources/pdf/papers/wabi02.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.464.3814","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.464.3814","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.unm.edu/~moret/wabi02a.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.6.8826","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.6.8826","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.unm.edu/~moret/wabi02a.ps","raw_type":"text"},{"id":"pmh:oai:infoscience.tind.io:165120","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/165120","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://infoscience.epfl.ch/record/165120","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:infoscience.tind.io:165120","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/165120","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://infoscience.epfl.ch/record/165120","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W67361246","https://openalex.org/W152315924","https://openalex.org/W1547622250","https://openalex.org/W1552410943","https://openalex.org/W1569808656","https://openalex.org/W1585116395","https://openalex.org/W1592788845","https://openalex.org/W1794479819","https://openalex.org/W1974676566","https://openalex.org/W1985530443","https://openalex.org/W1989978323","https://openalex.org/W2016530990","https://openalex.org/W2026452889","https://openalex.org/W2029943378","https://openalex.org/W2041246058","https://openalex.org/W2043207852","https://openalex.org/W2049796549","https://openalex.org/W2060973867","https://openalex.org/W2069010522","https://openalex.org/W2082638565","https://openalex.org/W2100665964","https://openalex.org/W2102813451","https://openalex.org/W2124862004","https://openalex.org/W2130849966","https://openalex.org/W2132940454","https://openalex.org/W2133090982","https://openalex.org/W2161192208","https://openalex.org/W4255466524","https://openalex.org/W4285719527","https://openalex.org/W6845193463"],"related_works":["https://openalex.org/W2111939425","https://openalex.org/W2375383082","https://openalex.org/W1789273902","https://openalex.org/W2144958703","https://openalex.org/W2529820324","https://openalex.org/W3166248435","https://openalex.org/W2074109964","https://openalex.org/W2886186111","https://openalex.org/W2518331723","https://openalex.org/W2472378828"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
