{"id":"https://openalex.org/W1549994062","doi":"https://doi.org/10.1007/3-540-44696-6_22","title":"A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites","display_name":"A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites","publication_year":2001,"publication_date":"2001-01-01","ids":{"openalex":"https://openalex.org/W1549994062","doi":"https://doi.org/10.1007/3-540-44696-6_22","mag":"1549994062"},"language":"en","primary_location":{"id":"doi:10.1007/3-540-44696-6_22","is_oa":false,"landing_page_url":"https://doi.org/10.1007/3-540-44696-6_22","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040287362","display_name":"Yoseph Barash","orcid":"https://orcid.org/0000-0003-3005-5048"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yoseph Barash","raw_affiliation_strings":["School of Computer Science & Engineering, The Hebrew University, Jerusalem, 91904, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science & Engineering, The Hebrew University, Jerusalem, 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085525898","display_name":"Gill Bejerano","orcid":"https://orcid.org/0000-0001-5179-3635"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Gill Bejerano","raw_affiliation_strings":["School of Computer Science & Engineering, The Hebrew University, Jerusalem, 91904, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science & Engineering, The Hebrew University, Jerusalem, 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076999649","display_name":"Nir Friedman","orcid":"https://orcid.org/0000-0002-9678-3550"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Nir Friedman","raw_affiliation_strings":["School of Computer Science & Engineering, The Hebrew University, Jerusalem, 91904, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science & Engineering, The Hebrew University, Jerusalem, 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I197251160"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":13.1308,"has_fulltext":false,"cited_by_count":96,"citation_normalized_percentile":{"value":0.98483081,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"278","last_page":"293"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6650316715240479},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6311508417129517},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5823314785957336},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.539078950881958},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5065709352493286},{"id":"https://openalex.org/keywords/cis-regulatory-module","display_name":"Cis-regulatory module","score":0.46156471967697144},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.45160141587257385},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.44318240880966187},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4271801710128784},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3548152446746826},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3455287218093872},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.3138991594314575},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25761860609054565},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2558087110519409},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.1733216941356659}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6650316715240479},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6311508417129517},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5823314785957336},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.539078950881958},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5065709352493286},{"id":"https://openalex.org/C190796033","wikidata":"https://www.wikidata.org/wiki/Q1093165","display_name":"Cis-regulatory module","level":5,"score":0.46156471967697144},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.45160141587257385},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.44318240880966187},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4271801710128784},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3548152446746826},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3455287218093872},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.3138991594314575},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25761860609054565},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2558087110519409},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.1733216941356659},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/3-540-44696-6_22","is_oa":false,"landing_page_url":"https://doi.org/10.1007/3-540-44696-6_22","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.23.7857","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.23.7857","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.huji.ac.il/~nir/Papers/BGF1.ps","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1544898920","https://openalex.org/W1580213736","https://openalex.org/W1586476557","https://openalex.org/W1592870802","https://openalex.org/W1594947347","https://openalex.org/W1956090332","https://openalex.org/W1998300401","https://openalex.org/W2005244073","https://openalex.org/W2009570821","https://openalex.org/W2026882865","https://openalex.org/W2028904582","https://openalex.org/W2032231928","https://openalex.org/W2054416990","https://openalex.org/W2057632640","https://openalex.org/W2060563775","https://openalex.org/W2084908610","https://openalex.org/W2103453943","https://openalex.org/W2110065044","https://openalex.org/W2115772919","https://openalex.org/W2135000328","https://openalex.org/W2135951244","https://openalex.org/W2137683543","https://openalex.org/W2146264532","https://openalex.org/W2147055980","https://openalex.org/W2150926065","https://openalex.org/W2162600254","https://openalex.org/W2165011536","https://openalex.org/W4245668478"],"related_works":["https://openalex.org/W2088084647","https://openalex.org/W2767394010","https://openalex.org/W2146517458","https://openalex.org/W68078148","https://openalex.org/W2131580913","https://openalex.org/W1576021314","https://openalex.org/W3033095439","https://openalex.org/W2125854412","https://openalex.org/W2379997263","https://openalex.org/W2367493320"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
