{"id":"https://openalex.org/W1542567763","doi":"https://doi.org/10.1007/3-540-36265-7_67","title":"Visual Programming for Modeling and Simulation of Biomolecular Regulatory Networks","display_name":"Visual Programming for Modeling and Simulation of Biomolecular Regulatory Networks","publication_year":2002,"publication_date":"2002-01-01","ids":{"openalex":"https://openalex.org/W1542567763","doi":"https://doi.org/10.1007/3-540-36265-7_67","mag":"1542567763"},"language":"en","primary_location":{"id":"doi:10.1007/3-540-36265-7_67","is_oa":false,"landing_page_url":"https://doi.org/10.1007/3-540-36265-7_67","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065059795","display_name":"Rajeev Alur","orcid":"https://orcid.org/0000-0003-1733-7083"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rajeev Alur","raw_affiliation_strings":["Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA"],"affiliations":[{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086742095","display_name":"C\u0103lin Belta","orcid":"https://orcid.org/0000-0002-7141-2657"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Calin Belta","raw_affiliation_strings":["Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA"],"affiliations":[{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020028377","display_name":"Franjo Ivan\u010di\u0107","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Franjo Ivan\u010di\u0107","raw_affiliation_strings":["Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA"],"affiliations":[{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112769739","display_name":"Vijay Kumar","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vijay Kumar","raw_affiliation_strings":["Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA"],"affiliations":[{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051987821","display_name":"Harvey Rubin","orcid":"https://orcid.org/0000-0002-2899-425X"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harvey Rubin","raw_affiliation_strings":["Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA"],"affiliations":[{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015126110","display_name":"Jonathan Schug","orcid":"https://orcid.org/0000-0001-6885-7869"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan Schug","raw_affiliation_strings":["Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA"],"affiliations":[{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082105260","display_name":"Oleg Sokolsky","orcid":"https://orcid.org/0000-0001-5282-0658"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oleg Sokolsky","raw_affiliation_strings":["Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA"],"affiliations":[{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, 19104, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Hybrid Systems Group, University of Pennsylvania, Philadelphia, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071812749","display_name":"Jonathan Webb","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jonathan Webb","raw_affiliation_strings":["BBN Technologies, 02138, Cambridge, MA, USA","BBN Technologies, Cambridge, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"BBN Technologies, 02138, Cambridge, MA, USA","institution_ids":[]},{"raw_affiliation_string":"BBN Technologies, Cambridge, USA#TAB#","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5065059795"],"corresponding_institution_ids":["https://openalex.org/I79576946"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.039,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.88124608,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"702","last_page":"712"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9775999784469604,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8528310060501099},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.7717808485031128},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.7541221976280212},{"id":"https://openalex.org/keywords/reachability","display_name":"Reachability","score":0.7116701006889343},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.41174018383026123},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.39434126019477844},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3376028835773468},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32312706112861633},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.28487181663513184}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8528310060501099},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.7717808485031128},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.7541221976280212},{"id":"https://openalex.org/C136643341","wikidata":"https://www.wikidata.org/wiki/Q1361526","display_name":"Reachability","level":2,"score":0.7116701006889343},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.41174018383026123},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.39434126019477844},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3376028835773468},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32312706112861633},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.28487181663513184},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/3-540-36265-7_67","is_oa":false,"landing_page_url":"https://doi.org/10.1007/3-540-36265-7_67","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:repository.upenn.edu:20.500.14332/6191","is_oa":false,"landing_page_url":"https://repository.upenn.edu/handle/20.500.14332/6191","pdf_url":null,"source":{"id":"https://openalex.org/S4377196331","display_name":"Scholarly Commons (University of Pennsylvania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79576946","host_organization_name":"University of Pennsylvania","host_organization_lineage":["https://openalex.org/I79576946"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2552","raw_type":"Presentation"},{"id":"pmh:oai:repository.upenn.edu:cis_papers-1182","is_oa":false,"landing_page_url":"https://repository.upenn.edu/cis_papers/161","pdf_url":null,"source":{"id":"https://openalex.org/S4306402083","display_name":"ScholarlyCommons (University of Pennsylvania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79576946","host_organization_name":"University of Pennsylvania","host_organization_lineage":["https://openalex.org/I79576946"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Departmental Papers (CIS)","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8799999952316284,"id":"https://metadata.un.org/sdg/14","display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1488872683","https://openalex.org/W1497571013","https://openalex.org/W1498631091","https://openalex.org/W1522448884","https://openalex.org/W1606928272","https://openalex.org/W1644749979","https://openalex.org/W1645305843","https://openalex.org/W1813788325","https://openalex.org/W1863703432","https://openalex.org/W1982258483","https://openalex.org/W2018601806","https://openalex.org/W2099529102","https://openalex.org/W2106361312","https://openalex.org/W2117218135","https://openalex.org/W2127230663","https://openalex.org/W2142590479","https://openalex.org/W2159765281","https://openalex.org/W3144368627","https://openalex.org/W6629660608","https://openalex.org/W6629753033","https://openalex.org/W6683799711"],"related_works":["https://openalex.org/W2136512912","https://openalex.org/W2127267268","https://openalex.org/W2156446763","https://openalex.org/W17155033","https://openalex.org/W2067910792","https://openalex.org/W2150194458","https://openalex.org/W2143461633","https://openalex.org/W2772294324","https://openalex.org/W2047831585","https://openalex.org/W4253760428"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}