{"id":"https://openalex.org/W1607023377","doi":"https://doi.org/10.1007/11946465_2","title":"Visualization of Functional Aspects of microRNA Regulatory Networks Using the Gene Ontology","display_name":"Visualization of Functional Aspects of microRNA Regulatory Networks Using the Gene Ontology","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1607023377","doi":"https://doi.org/10.1007/11946465_2","mag":"1607023377"},"language":"en","primary_location":{"id":"doi:10.1007/11946465_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11946465_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020744899","display_name":"Alkiviadis Symeonidis","orcid":null},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]},{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["FR","GR"],"is_corresponding":true,"raw_author_name":"Alkiviadis Symeonidis","raw_affiliation_strings":["Computer Science Department, University of Crete, \u00a0","Institute for Computer Science, Foundation for Research and Technology \u2013 Hellas, Heraklion, Crete, Greece","Computer Science Department, University of Crete,"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Crete, \u00a0","institution_ids":["https://openalex.org/I142617266"]},{"raw_affiliation_string":"Institute for Computer Science, Foundation for Research and Technology \u2013 Hellas, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I8901234"]},{"raw_affiliation_string":"Computer Science Department, University of Crete,","institution_ids":["https://openalex.org/I142617266","https://openalex.org/I4210156583"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081722763","display_name":"Ioannis G. Tollis","orcid":"https://orcid.org/0000-0002-5507-7692"},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]},{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]},{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR","GR"],"is_corresponding":false,"raw_author_name":"Ioannis G. Tollis","raw_affiliation_strings":["Computer Science Department, University of Crete, \u00a0","Institute for Computer Science, Foundation for Research and Technology \u2013 Hellas, Heraklion, Crete, Greece","Computer Science Department, University of Crete,"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Crete, \u00a0","institution_ids":["https://openalex.org/I142617266"]},{"raw_affiliation_string":"Institute for Computer Science, Foundation for Research and Technology \u2013 Hellas, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I8901234"]},{"raw_affiliation_string":"Computer Science Department, University of Crete,","institution_ids":["https://openalex.org/I142617266","https://openalex.org/I4210156583"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004335778","display_name":"Martin Reczko","orcid":"https://orcid.org/0000-0002-0005-8718"},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["FR","GR"],"is_corresponding":false,"raw_author_name":"Martin Reczko","raw_affiliation_strings":["Computer Science Department, University of Crete, \u00a0","Computer Science Department, University of Crete,"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Crete, \u00a0","institution_ids":["https://openalex.org/I142617266"]},{"raw_affiliation_string":"Computer Science Department, University of Crete,","institution_ids":["https://openalex.org/I142617266","https://openalex.org/I4210156583"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5020744899"],"corresponding_institution_ids":["https://openalex.org/I142617266","https://openalex.org/I4210156583","https://openalex.org/I8901234"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.4558,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.8930603,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"13","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6820546388626099},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.67738938331604},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.6147890686988831},{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.6009323000907898},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5758141875267029},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5620088577270508},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5525408983230591},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5258327722549438},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5247768759727478},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5156965851783752},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.44120317697525024},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3405863046646118},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24569088220596313},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.21736770868301392},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16117718815803528}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6820546388626099},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.67738938331604},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.6147890686988831},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.6009323000907898},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5758141875267029},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5620088577270508},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5525408983230591},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5258327722549438},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5247768759727478},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5156965851783752},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.44120317697525024},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3405863046646118},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24569088220596313},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.21736770868301392},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16117718815803528},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11946465_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11946465_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W73391352","https://openalex.org/W1972151695","https://openalex.org/W1975981804","https://openalex.org/W1985588322","https://openalex.org/W2002906478","https://openalex.org/W2024208603","https://openalex.org/W2040191060","https://openalex.org/W2050869737","https://openalex.org/W2055309264","https://openalex.org/W2060538865","https://openalex.org/W2071123968","https://openalex.org/W2071353749","https://openalex.org/W2076022481","https://openalex.org/W2089142809","https://openalex.org/W2094253263","https://openalex.org/W2096894782","https://openalex.org/W2102664288","https://openalex.org/W2106588364","https://openalex.org/W2120456037","https://openalex.org/W2133140903","https://openalex.org/W2138664009","https://openalex.org/W2146171942","https://openalex.org/W2146872957","https://openalex.org/W2163199119","https://openalex.org/W4230696817","https://openalex.org/W4245891287","https://openalex.org/W4250369401","https://openalex.org/W6602957581"],"related_works":["https://openalex.org/W2350278424","https://openalex.org/W2071432835","https://openalex.org/W4239401009","https://openalex.org/W4234371507","https://openalex.org/W1628824497","https://openalex.org/W4299534542","https://openalex.org/W2053441600","https://openalex.org/W1990401748","https://openalex.org/W2151393864","https://openalex.org/W2794019507"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
