{"id":"https://openalex.org/W1542057543","doi":"https://doi.org/10.1007/11925903_19","title":"A Framework for Modeling DNA Based Molecular Systems","display_name":"A Framework for Modeling DNA Based Molecular Systems","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1542057543","doi":"https://doi.org/10.1007/11925903_19","mag":"1542057543"},"language":"en","primary_location":{"id":"doi:10.1007/11925903_19","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11925903_19","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103337722","display_name":"Sudheer Sahu","orcid":null},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sudheer Sahu","raw_affiliation_strings":["Department of Computer Science, Duke University, Box 90129, Durham, NC, 27708-0129, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Duke University, Box 90129, Durham, NC, 27708-0129, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100349949","display_name":"Bei Wang","orcid":"https://orcid.org/0000-0002-4764-3789"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bei Wang","raw_affiliation_strings":["Department of Computer Science, Duke University, Box 90129, Durham, NC, 27708-0129, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Duke University, Box 90129, Durham, NC, 27708-0129, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007364145","display_name":"John H. Reif","orcid":"https://orcid.org/0000-0002-9096-2056"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John H. Reif","raw_affiliation_strings":["Department of Computer Science, Duke University, Box 90129, Durham, NC, 27708-0129, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Duke University, Box 90129, Durham, NC, 27708-0129, USA","institution_ids":["https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5103337722"],"corresponding_institution_ids":["https://openalex.org/I170897317"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":4.9163,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.94656055,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"250","last_page":"265"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7802112698554993},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.4949902892112732},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.49271777272224426},{"id":"https://openalex.org/keywords/discrete-event-simulation","display_name":"Discrete event simulation","score":0.45726829767227173},{"id":"https://openalex.org/keywords/displacement","display_name":"Displacement (psychology)","score":0.41362959146499634},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.36332938075065613},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36235511302948},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3565370440483093},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.3137301802635193},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.15106865763664246},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12156155705451965},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.11771693825721741}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7802112698554993},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.4949902892112732},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.49271777272224426},{"id":"https://openalex.org/C147203929","wikidata":"https://www.wikidata.org/wiki/Q574814","display_name":"Discrete event simulation","level":2,"score":0.45726829767227173},{"id":"https://openalex.org/C107551265","wikidata":"https://www.wikidata.org/wiki/Q1458245","display_name":"Displacement (psychology)","level":2,"score":0.41362959146499634},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.36332938075065613},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36235511302948},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3565370440483093},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.3137301802635193},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.15106865763664246},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12156155705451965},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.11771693825721741},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/11925903_19","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11925903_19","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.330.6283","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.330.6283","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.duke.edu/~reif/paper/sudheer/simulator/sahu.simulation.lncs.2006.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.67.6662","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.67.6662","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.duke.edu/~reif/paper/sudheer/simulator/simulator.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.68.9690","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.68.9690","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.duke.edu/~reif/paper/sudheer/simulator/DNA12simulator.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":118,"referenced_works":["https://openalex.org/W66302005","https://openalex.org/W940614434","https://openalex.org/W1490308645","https://openalex.org/W1492299013","https://openalex.org/W1498582737","https://openalex.org/W1510923188","https://openalex.org/W1516677870","https://openalex.org/W1542057543","https://openalex.org/W1558821368","https://openalex.org/W1567090568","https://openalex.org/W1607200676","https://openalex.org/W1617520624","https://openalex.org/W1628582474","https://openalex.org/W1646333690","https://openalex.org/W1656731888","https://openalex.org/W1660825269","https://openalex.org/W1671555706","https://openalex.org/W1735277988","https://openalex.org/W1794991410","https://openalex.org/W1964441323","https://openalex.org/W1966789782","https://openalex.org/W1968223381","https://openalex.org/W1969387036","https://openalex.org/W1970574292","https://openalex.org/W1971883398","https://openalex.org/W1973890190","https://openalex.org/W1977312644","https://openalex.org/W1978225787","https://openalex.org/W1984342172","https://openalex.org/W1984608056","https://openalex.org/W1989842473","https://openalex.org/W1990560699","https://openalex.org/W1991159148","https://openalex.org/W1998276013","https://openalex.org/W2000172601","https://openalex.org/W2001307989","https://openalex.org/W2003091620","https://openalex.org/W2003331604","https://openalex.org/W2006025262","https://openalex.org/W2006700468","https://openalex.org/W2006908644","https://openalex.org/W2007364878","https://openalex.org/W2010515564","https://openalex.org/W2016527271","https://openalex.org/W2016638271","https://openalex.org/W2017017495","https://openalex.org/W2023554752","https://openalex.org/W2027804504","https://openalex.org/W2027838042","https://openalex.org/W2030633358","https://openalex.org/W2032346723","https://openalex.org/W2033558609","https://openalex.org/W2033763942","https://openalex.org/W2036475903","https://openalex.org/W2036673002","https://openalex.org/W2039154042","https://openalex.org/W2040894120","https://openalex.org/W2045347584","https://openalex.org/W2047439171","https://openalex.org/W2049001845","https://openalex.org/W2051934627","https://openalex.org/W2053783019","https://openalex.org/W2056760934","https://openalex.org/W2058796681","https://openalex.org/W2060072762","https://openalex.org/W2060225558","https://openalex.org/W2064773175","https://openalex.org/W2064979162","https://openalex.org/W2065013877","https://openalex.org/W2066242376","https://openalex.org/W2068041587","https://openalex.org/W2068744615","https://openalex.org/W2070277286","https://openalex.org/W2070649207","https://openalex.org/W2071836755","https://openalex.org/W2072687635","https://openalex.org/W2073747644","https://openalex.org/W2073878632","https://openalex.org/W2077830471","https://openalex.org/W2079833031","https://openalex.org/W2080635962","https://openalex.org/W2080749196","https://openalex.org/W2081407528","https://openalex.org/W2084924279","https://openalex.org/W2089588871","https://openalex.org/W2094482261","https://openalex.org/W2095170984","https://openalex.org/W2096883982","https://openalex.org/W2097228362","https://openalex.org/W2097293881","https://openalex.org/W2104618027","https://openalex.org/W2110310069","https://openalex.org/W2111724365","https://openalex.org/W2112333437","https://openalex.org/W2121425178","https://openalex.org/W2132315489","https://openalex.org/W2135995702","https://openalex.org/W2137103459","https://openalex.org/W2138013836","https://openalex.org/W2138309709","https://openalex.org/W2142293622","https://openalex.org/W2148775102","https://openalex.org/W2149532209","https://openalex.org/W2149681483","https://openalex.org/W2151086927","https://openalex.org/W2153700418","https://openalex.org/W2154781427","https://openalex.org/W2155418451","https://openalex.org/W2166007193","https://openalex.org/W2166633151","https://openalex.org/W2169371925","https://openalex.org/W2238882387","https://openalex.org/W2377145066","https://openalex.org/W3101238401","https://openalex.org/W4210493499","https://openalex.org/W4230793764","https://openalex.org/W4234689925","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2153938529","https://openalex.org/W2127782709","https://openalex.org/W303980170","https://openalex.org/W2351491280","https://openalex.org/W2331069340","https://openalex.org/W2026039762","https://openalex.org/W2783548027","https://openalex.org/W2129312943","https://openalex.org/W2463765483","https://openalex.org/W2758436327"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}