{"id":"https://openalex.org/W1537389498","doi":"https://doi.org/10.1007/11885191_7","title":"Feedbacks and Oscillations in the Virtual Cell VICE","display_name":"Feedbacks and Oscillations in the Virtual Cell VICE","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1537389498","doi":"https://doi.org/10.1007/11885191_7","mag":"1537389498"},"language":"en","primary_location":{"id":"doi:10.1007/11885191_7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11885191_7","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000327522","display_name":"Davide Chiarugi","orcid":"https://orcid.org/0000-0003-2752-3189"},"institutions":[{"id":"https://openalex.org/I102064193","display_name":"University of Siena","ror":"https://ror.org/01tevnk56","country_code":"IT","type":"education","lineage":["https://openalex.org/I102064193"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"D. Chiarugi","raw_affiliation_strings":["Dipartimento di Scienze Matematiche e Informatiche, Universit\u2018a di Siena,"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Matematiche e Informatiche, Universit\u2018a di Siena,","institution_ids":["https://openalex.org/I102064193"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088287807","display_name":"M. Chinellato","orcid":null},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"M. Chinellato","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u2018a di Pisa,"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u2018a di Pisa,","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055365661","display_name":"Pierpaolo Degano","orcid":"https://orcid.org/0000-0002-8070-4838"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]},{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"P. Degano","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u2018a di Pisa,","The Microsoft Research \u2013 University of Trento Centre for Computational and Systems Biology,"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u2018a di Pisa,","institution_ids":["https://openalex.org/I108290504"]},{"raw_affiliation_string":"The Microsoft Research \u2013 University of Trento Centre for Computational and Systems Biology,","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083131559","display_name":"G. Lo Brutto","orcid":null},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"G. Lo Brutto","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u2018a di Pisa,"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u2018a di Pisa,","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080527399","display_name":"Roberto Marangoni","orcid":"https://orcid.org/0000-0002-6603-6984"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"R. Marangoni","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u2018a di Pisa,"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u2018a di Pisa,","institution_ids":["https://openalex.org/I108290504"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5000327522"],"corresponding_institution_ids":["https://openalex.org/I102064193"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.6139,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.74467739,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"93","last_page":"107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6975374817848206},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.628837525844574},{"id":"https://openalex.org/keywords/phosphofructokinase","display_name":"Phosphofructokinase","score":0.5057127475738525},{"id":"https://openalex.org/keywords/versa","display_name":"Versa","score":0.4179037809371948},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3455425500869751},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3212376832962036},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20244842767715454},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1468975841999054},{"id":"https://openalex.org/keywords/glycolysis","display_name":"Glycolysis","score":0.13952207565307617},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.13794872164726257},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1158042848110199},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.10497292876243591}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6975374817848206},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.628837525844574},{"id":"https://openalex.org/C122245378","wikidata":"https://www.wikidata.org/wiki/Q14771739","display_name":"Phosphofructokinase","level":4,"score":0.5057127475738525},{"id":"https://openalex.org/C2777655698","wikidata":"https://www.wikidata.org/wiki/Q1209358","display_name":"Versa","level":2,"score":0.4179037809371948},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3455425500869751},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3212376832962036},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20244842767715454},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1468975841999054},{"id":"https://openalex.org/C20251656","wikidata":"https://www.wikidata.org/wiki/Q162643","display_name":"Glycolysis","level":3,"score":0.13952207565307617},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.13794872164726257},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1158042848110199},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.10497292876243591},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11885191_7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11885191_7","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W291482096","https://openalex.org/W1484198052","https://openalex.org/W1575526407","https://openalex.org/W1597762351","https://openalex.org/W1603799276","https://openalex.org/W1851642289","https://openalex.org/W1980207389","https://openalex.org/W1989712725","https://openalex.org/W1991027534","https://openalex.org/W1997493743","https://openalex.org/W2007006124","https://openalex.org/W2015519162","https://openalex.org/W2020087124","https://openalex.org/W2026564977","https://openalex.org/W2040890820","https://openalex.org/W2044859335","https://openalex.org/W2053096433","https://openalex.org/W2078734278","https://openalex.org/W2089791419","https://openalex.org/W2093615674","https://openalex.org/W2110796675","https://openalex.org/W2122638857","https://openalex.org/W2131067724","https://openalex.org/W2138519564","https://openalex.org/W2155418451","https://openalex.org/W2161257056","https://openalex.org/W2284263109"],"related_works":["https://openalex.org/W4243539654","https://openalex.org/W2054561947","https://openalex.org/W2012502283","https://openalex.org/W2912862995","https://openalex.org/W1999515821","https://openalex.org/W3129816939","https://openalex.org/W127848564","https://openalex.org/W2414178557","https://openalex.org/W2506095657","https://openalex.org/W116287749"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}