{"id":"https://openalex.org/W1519657771","doi":"https://doi.org/10.1007/11846802_57","title":"Improved GROMACS Scaling on Ethernet Switched Clusters","display_name":"Improved GROMACS Scaling on Ethernet Switched Clusters","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1519657771","doi":"https://doi.org/10.1007/11846802_57","mag":"1519657771"},"language":"en","primary_location":{"id":"doi:10.1007/11846802_57","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11846802_57","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/11858/00-001M-0000-0012-E6A7-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015041475","display_name":"Carsten Kutzner","orcid":"https://orcid.org/0000-0002-8719-0307"},"institutions":[{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Carsten Kutzner","raw_affiliation_strings":["Department of Theoretical and Computational Biophysics, Max-Planck-Institute of Biophysical Chemistry, Am Fassberg 11, 37077, G\u00f6ttingen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical and Computational Biophysics, Max-Planck-Institute of Biophysical Chemistry, Am Fassberg 11, 37077, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210131661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020854808","display_name":"David van der Spoel","orcid":"https://orcid.org/0000-0002-7659-8526"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"David van der Spoel","raw_affiliation_strings":["Department of Cell and Molecular Biology, Uppsala University, Husargatan 3, S-75124, Uppsala, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology, Uppsala University, Husargatan 3, S-75124, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013369945","display_name":"Martin Fechner","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Fechner","raw_affiliation_strings":["Department of Theoretical and Computational Biophysics, Max-Planck-Institute of Biophysical Chemistry, Am Fassberg 11, 37077, G\u00f6ttingen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical and Computational Biophysics, Max-Planck-Institute of Biophysical Chemistry, Am Fassberg 11, 37077, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210131661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008875190","display_name":"Erik Lindahl","orcid":"https://orcid.org/0000-0002-2734-2794"},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Erik Lindahl","raw_affiliation_strings":["Stockholm Bioinformatics Center, SCFAB, Stockholm University, SE-10691, Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Stockholm Bioinformatics Center, SCFAB, Stockholm University, SE-10691, Stockholm, Sweden","institution_ids":["https://openalex.org/I161593684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032928928","display_name":"Udo W. Schmitt","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Udo W. Schmitt","raw_affiliation_strings":["Department of Theoretical and Computational Biophysics, Max-Planck-Institute of Biophysical Chemistry, Am Fassberg 11, 37077, G\u00f6ttingen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical and Computational Biophysics, Max-Planck-Institute of Biophysical Chemistry, Am Fassberg 11, 37077, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210131661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044839728","display_name":"Bert L. de Groot","orcid":"https://orcid.org/0000-0003-3570-3534"},"institutions":[{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bert L. de Groot","raw_affiliation_strings":["Department of Theoretical and Computational Biophysics, Max-Planck-Institute of Biophysical Chemistry, Am Fassberg 11, 37077, G\u00f6ttingen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical and Computational Biophysics, Max-Planck-Institute of Biophysical Chemistry, Am Fassberg 11, 37077, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210131661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045212144","display_name":"Helmut Grubm\u00fcller","orcid":"https://orcid.org/0000-0002-3270-3144"},"institutions":[{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Helmut Grubm\u00fcller","raw_affiliation_strings":["Department of Theoretical and Computational Biophysics, Max-Planck-Institute of Biophysical Chemistry, Am Fassberg 11, 37077, G\u00f6ttingen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Theoretical and Computational Biophysics, Max-Planck-Institute of Biophysical Chemistry, Am Fassberg 11, 37077, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210131661"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5015041475"],"corresponding_institution_ids":["https://openalex.org/I4210131661"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.05506608,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"404","last_page":"405"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11993","display_name":"Atomic and Subatomic Physics Research","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/myrinet","display_name":"Myrinet","score":0.9275728464126587},{"id":"https://openalex.org/keywords/infiniband","display_name":"InfiniBand","score":0.8996606469154358},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8071173429489136},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6524633169174194},{"id":"https://openalex.org/keywords/ethernet","display_name":"Ethernet","score":0.5903452038764954},{"id":"https://openalex.org/keywords/remote-direct-memory-access","display_name":"Remote direct memory access","score":0.5892476439476013},{"id":"https://openalex.org/keywords/xeon","display_name":"Xeon","score":0.5791373252868652},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.5062140822410583},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.49968814849853516},{"id":"https://openalex.org/keywords/message-passing","display_name":"Message passing","score":0.23237106204032898}],"concepts":[{"id":"https://openalex.org/C2780601250","wikidata":"https://www.wikidata.org/wiki/Q1863181","display_name":"Myrinet","level":3,"score":0.9275728464126587},{"id":"https://openalex.org/C2781030343","wikidata":"https://www.wikidata.org/wiki/Q922437","display_name":"InfiniBand","level":2,"score":0.8996606469154358},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8071173429489136},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6524633169174194},{"id":"https://openalex.org/C172173386","wikidata":"https://www.wikidata.org/wiki/Q79984","display_name":"Ethernet","level":2,"score":0.5903452038764954},{"id":"https://openalex.org/C130795937","wikidata":"https://www.wikidata.org/wiki/Q2561570","display_name":"Remote direct memory access","level":2,"score":0.5892476439476013},{"id":"https://openalex.org/C145108525","wikidata":"https://www.wikidata.org/wiki/Q656154","display_name":"Xeon","level":2,"score":0.5791373252868652},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.5062140822410583},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.49968814849853516},{"id":"https://openalex.org/C854659","wikidata":"https://www.wikidata.org/wiki/Q1859284","display_name":"Message passing","level":2,"score":0.23237106204032898}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/11846802_57","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11846802_57","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1000.740","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1000.740","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://pubman.mpdl.mpg.de/pubman/item/escidoc%3A597573/component/escidoc%3A597572/293315.pdf","raw_type":"text"},{"id":"pmh:oai:edoc.mpg.de:293315","is_oa":false,"landing_page_url":"http://edoc.mpg.de/293315","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Recent advances in parallel virtual machine and message passing interface. 13th European PVM/MPI User`s Group meeting, Bonn, Germany, September 17-20, 2006, 404-405 (2006)","raw_type":"InBook"},{"id":"pmh:oai:pure.mpg.de:item_597573","is_oa":true,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0012-E6A7-1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Recent advances in parallel virtual machine and message passing interface. 13th European PVM/MPI User`s Group meeting, Bonn, Germany, September 17-20, 2006","raw_type":"info:eu-repo/semantics/bookPart"}],"best_oa_location":{"id":"pmh:oai:pure.mpg.de:item_597573","is_oa":true,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0012-E6A7-1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Recent advances in parallel virtual machine and message passing interface. 13th European PVM/MPI User`s Group meeting, Bonn, Germany, September 17-20, 2006","raw_type":"info:eu-repo/semantics/bookPart"},"sustainable_development_goals":[{"score":0.75,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W2026116629","https://openalex.org/W2035687084","https://openalex.org/W2035745435","https://openalex.org/W2053885966","https://openalex.org/W2067174909","https://openalex.org/W2131613942","https://openalex.org/W2171268876"],"related_works":["https://openalex.org/W2104094072","https://openalex.org/W1978254186","https://openalex.org/W4246679332","https://openalex.org/W2148030923","https://openalex.org/W2007129194","https://openalex.org/W2146390972","https://openalex.org/W3146239682","https://openalex.org/W1974037879","https://openalex.org/W1974732218","https://openalex.org/W2978025650"],"abstract_inverted_index":null,"counts_by_year":[{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
