{"id":"https://openalex.org/W2133073361","doi":"https://doi.org/10.1007/11780441_9","title":"Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures","display_name":"Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W2133073361","doi":"https://doi.org/10.1007/11780441_9","mag":"2133073361"},"language":"en","primary_location":{"id":"doi:10.1007/11780441_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11780441_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043159528","display_name":"Tetsuo Shibuya","orcid":"https://orcid.org/0000-0003-1514-5766"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Tetsuo Shibuya","raw_affiliation_strings":["Human Genome Center, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo, Japan","Human Genome Center, Institute of Medical Science, University of Tokyo Minato-ku, Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genome Center, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Human Genome Center, Institute of Medical Science, University of Tokyo Minato-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5043159528"],"corresponding_institution_ids":["https://openalex.org/I161296585","https://openalex.org/I74801974"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.1984,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.88620327,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"84","last_page":"93"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11339","display_name":"Metabolism, Diabetes, and Cancer","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11106","display_name":"Data Management and Algorithms","score":0.96670001745224,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.8493540287017822},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.8211559057235718},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.747473418712616},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.6896584033966064},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6738224625587463},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6720874905586243},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.5485787987709045},{"id":"https://openalex.org/keywords/tree-structure","display_name":"Tree structure","score":0.49152907729148865},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4749883711338043},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.46246451139450073},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4550905227661133},{"id":"https://openalex.org/keywords/suffix-array","display_name":"Suffix array","score":0.4549616575241089},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.44121941924095154},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.3257867693901062},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2817443907260895},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17553651332855225}],"concepts":[{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.8493540287017822},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.8211559057235718},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.747473418712616},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.6896584033966064},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6738224625587463},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6720874905586243},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.5485787987709045},{"id":"https://openalex.org/C163797641","wikidata":"https://www.wikidata.org/wiki/Q2067937","display_name":"Tree structure","level":3,"score":0.49152907729148865},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4749883711338043},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.46246451139450073},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4550905227661133},{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.4549616575241089},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.44121941924095154},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.3257867693901062},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2817443907260895},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17553651332855225},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11780441_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11780441_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1966521833","https://openalex.org/W1982137958","https://openalex.org/W1988874269","https://openalex.org/W1990061958","https://openalex.org/W2059513841","https://openalex.org/W2071037669","https://openalex.org/W2076293036","https://openalex.org/W2085972085","https://openalex.org/W2107079154","https://openalex.org/W2117499714","https://openalex.org/W2121252285","https://openalex.org/W2122761632","https://openalex.org/W2130479394","https://openalex.org/W2133724340","https://openalex.org/W2144453646","https://openalex.org/W2161773631","https://openalex.org/W2165053603","https://openalex.org/W2410087334","https://openalex.org/W2533248932","https://openalex.org/W2611102240","https://openalex.org/W2798909945"],"related_works":["https://openalex.org/W2063841356","https://openalex.org/W2405149725","https://openalex.org/W2003608043","https://openalex.org/W2118703123","https://openalex.org/W1527782099","https://openalex.org/W2067974452","https://openalex.org/W4385595111","https://openalex.org/W1543263356","https://openalex.org/W1749587086","https://openalex.org/W117230746"],"abstract_inverted_index":null,"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}