{"id":"https://openalex.org/W1519661045","doi":"https://doi.org/10.1007/11751540_24","title":"Yeast Naked DNA Spatial Organization Predisposes to Transcriptional Regulation","display_name":"Yeast Naked DNA Spatial Organization Predisposes to Transcriptional Regulation","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1519661045","doi":"https://doi.org/10.1007/11751540_24","mag":"1519661045"},"language":"en","primary_location":{"id":"doi:10.1007/11751540_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11751540_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030134788","display_name":"Oriane Matte-Tailliez","orcid":null},"institutions":[{"id":"https://openalex.org/I4210107733","display_name":"Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Oriane Matte-Tailliez","raw_affiliation_strings":["Bioinformatics Team, LIMSI & IBISC CNRS, Genopole Evry","Inference and Learning, LRI, UMR CNRS 8326, Universit\u00e9 Paris 11, Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Team, LIMSI & IBISC CNRS, Genopole Evry","institution_ids":["https://openalex.org/I4210107733","https://openalex.org/I4210115485","https://openalex.org/I4210128926"]},{"raw_affiliation_string":"Inference and Learning, LRI, UMR CNRS 8326, Universit\u00e9 Paris 11, Orsay Cedex, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113667468","display_name":"Joan H\u00e9risson","orcid":null},"institutions":[{"id":"https://openalex.org/I4210107733","display_name":"Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Joan H\u00e9risson","raw_affiliation_strings":["Bioinformatics Team, LIMSI & IBISC CNRS, Genopole Evry"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Team, LIMSI & IBISC CNRS, Genopole Evry","institution_ids":["https://openalex.org/I4210107733","https://openalex.org/I4210115485","https://openalex.org/I4210128926"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062588006","display_name":"Nicolas F\u00e9rey","orcid":"https://orcid.org/0000-0002-7713-001X"},"institutions":[{"id":"https://openalex.org/I4210107733","display_name":"Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nicolas Ferey","raw_affiliation_strings":["Bioinformatics Team, LIMSI & IBISC CNRS, Genopole Evry"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Team, LIMSI & IBISC CNRS, Genopole Evry","institution_ids":["https://openalex.org/I4210107733","https://openalex.org/I4210115485","https://openalex.org/I4210128926"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063189661","display_name":"Olivier Magneau","orcid":null},"institutions":[{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Magneau","raw_affiliation_strings":["VENISE transversal action on V&AR, LIMSI-CNRS, Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"VENISE transversal action on V&AR, LIMSI-CNRS, Orsay Cedex, France","institution_ids":["https://openalex.org/I4210115485","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111436092","display_name":"Pierre Emmanuel Gros","orcid":null},"institutions":[{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Emmanuel Gros","raw_affiliation_strings":["Bioinformatics Team, LIMSI & IBISC CNRS, Genopole Evry"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Team, LIMSI & IBISC CNRS, Genopole Evry","institution_ids":["https://openalex.org/I4210107733","https://openalex.org/I4210115485","https://openalex.org/I4210128926"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052082741","display_name":"Fran\u00e7ois K\u00e9p\u00e8s","orcid":"https://orcid.org/0000-0001-5766-4957"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois K\u00e9p\u00e8s","raw_affiliation_strings":["Epigenomics project & Atelier de G\u00e9nomique Cognitive, CNRS UMR 8071, Evry, France"],"affiliations":[{"raw_affiliation_string":"Epigenomics project & Atelier de G\u00e9nomique Cognitive, CNRS UMR 8071, Evry, France","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066466927","display_name":"Rachid Gherbi","orcid":"https://orcid.org/0009-0003-6303-2907"},"institutions":[{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]},{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Rachid Gherbi","raw_affiliation_strings":["Bioinformatics Team, LIMSI & IBISC CNRS, Genopole Evry"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Team, LIMSI & IBISC CNRS, Genopole Evry","institution_ids":["https://openalex.org/I4210107733","https://openalex.org/I4210115485","https://openalex.org/I4210128926"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5030134788"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I4210115485","https://openalex.org/I4210128926","https://openalex.org/I4210144804"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.2279,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.8200065,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"222","last_page":"231"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.6376244425773621},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5934075117111206},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.567042887210846},{"id":"https://openalex.org/keywords/naked-dna","display_name":"Naked DNA","score":0.5606459379196167},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.535291314125061},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4953731298446655},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49034738540649414},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4477100074291229},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.43302056193351746},{"id":"https://openalex.org/keywords/spatial-organization","display_name":"Spatial organization","score":0.4121735990047455},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3913843631744385},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3821675777435303},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.27842289209365845}],"concepts":[{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.6376244425773621},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5934075117111206},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.567042887210846},{"id":"https://openalex.org/C195856716","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"Naked DNA","level":4,"score":0.5606459379196167},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.535291314125061},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4953731298446655},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49034738540649414},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4477100074291229},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.43302056193351746},{"id":"https://openalex.org/C175779824","wikidata":"https://www.wikidata.org/wiki/Q7574078","display_name":"Spatial organization","level":2,"score":0.4121735990047455},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3913843631744385},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3821675777435303},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.27842289209365845},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11751540_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11751540_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1495746426","https://openalex.org/W1502617758","https://openalex.org/W1963733856","https://openalex.org/W1974089947","https://openalex.org/W1981840277","https://openalex.org/W1990014075","https://openalex.org/W2001090645","https://openalex.org/W2011913743","https://openalex.org/W2020977773","https://openalex.org/W2040945279","https://openalex.org/W2064180274","https://openalex.org/W2065915143","https://openalex.org/W2069898971","https://openalex.org/W2071321615","https://openalex.org/W2072969249","https://openalex.org/W2073026107","https://openalex.org/W2074949379","https://openalex.org/W2083859506","https://openalex.org/W2089749108","https://openalex.org/W2110699703","https://openalex.org/W2113478190","https://openalex.org/W2126602684","https://openalex.org/W2138553043","https://openalex.org/W2151456132","https://openalex.org/W2154259718","https://openalex.org/W2159479483","https://openalex.org/W2161358754","https://openalex.org/W2418979818","https://openalex.org/W2419233870","https://openalex.org/W4244107190"],"related_works":["https://openalex.org/W2075545024","https://openalex.org/W2468371639","https://openalex.org/W2013357382","https://openalex.org/W3028537630","https://openalex.org/W1987024074","https://openalex.org/W2417066556","https://openalex.org/W2425377149","https://openalex.org/W1968894501","https://openalex.org/W2614210633","https://openalex.org/W2071190373"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
