{"id":"https://openalex.org/W1837776317","doi":"https://doi.org/10.1007/11740698_18","title":"Evolutionary Design of a DDPD Model of Ligation","display_name":"Evolutionary Design of a DDPD Model of Ligation","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1837776317","doi":"https://doi.org/10.1007/11740698_18","mag":"1837776317"},"language":"en","primary_location":{"id":"doi:10.1007/11740698_18","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11740698_18","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055738163","display_name":"Mark A. Bedau","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095819","display_name":"Consorzio Venezia Ricerche","ror":"https://ror.org/00kh6pc76","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210095819"]},{"id":"https://openalex.org/I4210137980","display_name":"European Centre for Living Technology","ror":"https://ror.org/04kesq777","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137980"]},{"id":"https://openalex.org/I55486353","display_name":"Reed College","ror":"https://ror.org/00a6ram87","country_code":"US","type":"education","lineage":["https://openalex.org/I55486353"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Mark A. Bedau","raw_affiliation_strings":["European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","Protolife S.r.l., Via della Libert\u00e0 12, Marghera, Venezia, 30175, Italy","Reed College, 3203 SE Woodstock Blvd., Portland, OR, 97202, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","institution_ids":["https://openalex.org/I4210137980"]},{"raw_affiliation_string":"Protolife S.r.l., Via della Libert\u00e0 12, Marghera, Venezia, 30175, Italy","institution_ids":["https://openalex.org/I4210095819"]},{"raw_affiliation_string":"Reed College, 3203 SE Woodstock Blvd., Portland, OR, 97202, USA","institution_ids":["https://openalex.org/I55486353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109459675","display_name":"Andrew Buchanan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095819","display_name":"Consorzio Venezia Ricerche","ror":"https://ror.org/00kh6pc76","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210095819"]},{"id":"https://openalex.org/I4210137980","display_name":"European Centre for Living Technology","ror":"https://ror.org/04kesq777","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137980"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrew Buchanan","raw_affiliation_strings":["European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","Protolife S.r.l., Via della Libert\u00e0 12, Marghera, Venezia, 30175, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","institution_ids":["https://openalex.org/I4210137980"]},{"raw_affiliation_string":"Protolife S.r.l., Via della Libert\u00e0 12, Marghera, Venezia, 30175, Italy","institution_ids":["https://openalex.org/I4210095819"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069101499","display_name":"Gianluca Gazzola","orcid":"https://orcid.org/0000-0002-8306-1225"},"institutions":[{"id":"https://openalex.org/I4210095819","display_name":"Consorzio Venezia Ricerche","ror":"https://ror.org/00kh6pc76","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210095819"]},{"id":"https://openalex.org/I4210137980","display_name":"European Centre for Living Technology","ror":"https://ror.org/04kesq777","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137980"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianluca Gazzola","raw_affiliation_strings":["European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","Protolife S.r.l., Via della Libert\u00e0 12, Marghera, Venezia, 30175, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","institution_ids":["https://openalex.org/I4210137980"]},{"raw_affiliation_string":"Protolife S.r.l., Via della Libert\u00e0 12, Marghera, Venezia, 30175, Italy","institution_ids":["https://openalex.org/I4210095819"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010364068","display_name":"Martin M. Hanczyc","orcid":"https://orcid.org/0000-0002-5453-2139"},"institutions":[{"id":"https://openalex.org/I4210095819","display_name":"Consorzio Venezia Ricerche","ror":"https://ror.org/00kh6pc76","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210095819"]},{"id":"https://openalex.org/I4210137980","display_name":"European Centre for Living Technology","ror":"https://ror.org/04kesq777","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137980"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Martin Hanczyc","raw_affiliation_strings":["European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","Protolife S.r.l., Via della Libert\u00e0 12, Marghera, Venezia, 30175, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","institution_ids":["https://openalex.org/I4210137980"]},{"raw_affiliation_string":"Protolife S.r.l., Via della Libert\u00e0 12, Marghera, Venezia, 30175, Italy","institution_ids":["https://openalex.org/I4210095819"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053249415","display_name":"Thomas Maeke","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137980","display_name":"European Centre for Living Technology","ror":"https://ror.org/04kesq777","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137980"]},{"id":"https://openalex.org/I904495901","display_name":"Ruhr University Bochum","ror":"https://ror.org/04tsk2644","country_code":"DE","type":"education","lineage":["https://openalex.org/I904495901"]}],"countries":["DE","IT"],"is_corresponding":false,"raw_author_name":"Thomas Maeke","raw_affiliation_strings":["Biomolecular Information Processing, Ruhr-Universitat Bochum, c/o IZB Schloss Birlinghoven, D-53754, Sankt Augustin, Germany","European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomolecular Information Processing, Ruhr-Universitat Bochum, c/o IZB Schloss Birlinghoven, D-53754, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I904495901"]},{"raw_affiliation_string":"European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","institution_ids":["https://openalex.org/I4210137980"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057541113","display_name":"John S. McCaskill","orcid":"https://orcid.org/0000-0002-3408-7357"},"institutions":[{"id":"https://openalex.org/I4210137980","display_name":"European Centre for Living Technology","ror":"https://ror.org/04kesq777","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137980"]},{"id":"https://openalex.org/I904495901","display_name":"Ruhr University Bochum","ror":"https://ror.org/04tsk2644","country_code":"DE","type":"education","lineage":["https://openalex.org/I904495901"]}],"countries":["DE","IT"],"is_corresponding":false,"raw_author_name":"John McCaskill","raw_affiliation_strings":["Biomolecular Information Processing, Ruhr-Universitat Bochum, c/o IZB Schloss Birlinghoven, D-53754, Sankt Augustin, Germany","European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomolecular Information Processing, Ruhr-Universitat Bochum, c/o IZB Schloss Birlinghoven, D-53754, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I904495901"]},{"raw_affiliation_string":"European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","institution_ids":["https://openalex.org/I4210137980"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062549399","display_name":"Irene Poli","orcid":"https://orcid.org/0000-0001-7828-2480"},"institutions":[{"id":"https://openalex.org/I149461666","display_name":"Ca' Foscari University of Venice","ror":"https://ror.org/04yzxz566","country_code":"IT","type":"education","lineage":["https://openalex.org/I149461666"]},{"id":"https://openalex.org/I4210137980","display_name":"European Centre for Living Technology","ror":"https://ror.org/04kesq777","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137980"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Irene Poli","raw_affiliation_strings":["European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","University of Venice Ca\u2019 Foscari, San Polo 2347, Venezia, 30125, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","institution_ids":["https://openalex.org/I4210137980"]},{"raw_affiliation_string":"University of Venice Ca\u2019 Foscari, San Polo 2347, Venezia, 30125, Italy","institution_ids":["https://openalex.org/I149461666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024595724","display_name":"Norman H. Packard","orcid":"https://orcid.org/0000-0003-4905-714X"},"institutions":[{"id":"https://openalex.org/I4210095819","display_name":"Consorzio Venezia Ricerche","ror":"https://ror.org/00kh6pc76","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210095819"]},{"id":"https://openalex.org/I4210137980","display_name":"European Centre for Living Technology","ror":"https://ror.org/04kesq777","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210137980"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Norman H. Packard","raw_affiliation_strings":["European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","Protolife S.r.l., Via della Libert\u00e0 12, Marghera, Venezia, 30175, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Center for Living Technology, S. Croce 1681, Venezia, 30135, Italy","institution_ids":["https://openalex.org/I4210137980"]},{"raw_affiliation_string":"Protolife S.r.l., Via della Libert\u00e0 12, Marghera, Venezia, 30175, Italy","institution_ids":["https://openalex.org/I4210095819"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":4.9182,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.94856818,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"201","last_page":"212"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10913","display_name":"Molecular Junctions and Nanostructures","score":0.9760000109672546,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.974399983882904,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dissipative-particle-dynamics","display_name":"Dissipative particle dynamics","score":0.9363244771957397},{"id":"https://openalex.org/keywords/dissipative-system","display_name":"Dissipative system","score":0.6874682903289795},{"id":"https://openalex.org/keywords/chemical-ligation","display_name":"Chemical ligation","score":0.5820122361183167},{"id":"https://openalex.org/keywords/ligation","display_name":"Ligation","score":0.5722454786300659},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5099729299545288},{"id":"https://openalex.org/keywords/associative-property","display_name":"Associative property","score":0.4323175549507141},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42494070529937744},{"id":"https://openalex.org/keywords/particle","display_name":"Particle (ecology)","score":0.41697007417678833},{"id":"https://openalex.org/keywords/chemical-bond","display_name":"Chemical bond","score":0.41233301162719727},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3943977355957031},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.3904701769351959},{"id":"https://openalex.org/keywords/chemical-physics","display_name":"Chemical physics","score":0.35646218061447144},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.3334358334541321},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.3073408007621765},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2943819761276245},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.24446409940719604},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.18625661730766296},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1649266481399536},{"id":"https://openalex.org/keywords/polymer","display_name":"Polymer","score":0.0921410322189331},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09097877144813538},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.07806849479675293},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.06806004047393799}],"concepts":[{"id":"https://openalex.org/C45594756","wikidata":"https://www.wikidata.org/wiki/Q5282784","display_name":"Dissipative particle dynamics","level":3,"score":0.9363244771957397},{"id":"https://openalex.org/C99692599","wikidata":"https://www.wikidata.org/wiki/Q596577","display_name":"Dissipative system","level":2,"score":0.6874682903289795},{"id":"https://openalex.org/C99207889","wikidata":"https://www.wikidata.org/wiki/Q5090481","display_name":"Chemical ligation","level":3,"score":0.5820122361183167},{"id":"https://openalex.org/C179437574","wikidata":"https://www.wikidata.org/wiki/Q15089798","display_name":"Ligation","level":2,"score":0.5722454786300659},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5099729299545288},{"id":"https://openalex.org/C159423971","wikidata":"https://www.wikidata.org/wiki/Q177251","display_name":"Associative property","level":2,"score":0.4323175549507141},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42494070529937744},{"id":"https://openalex.org/C2778517922","wikidata":"https://www.wikidata.org/wiki/Q7140482","display_name":"Particle (ecology)","level":2,"score":0.41697007417678833},{"id":"https://openalex.org/C178213299","wikidata":"https://www.wikidata.org/wiki/Q44424","display_name":"Chemical bond","level":2,"score":0.41233301162719727},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3943977355957031},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.3904701769351959},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.35646218061447144},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.3334358334541321},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.3073408007621765},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2943819761276245},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.24446409940719604},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.18625661730766296},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1649266481399536},{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.0921410322189331},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09097877144813538},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.07806849479675293},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.06806004047393799},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11740698_18","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11740698_18","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1585699712","https://openalex.org/W1979795987","https://openalex.org/W1987348015","https://openalex.org/W2003364804","https://openalex.org/W2027522610","https://openalex.org/W2029258147","https://openalex.org/W2032655419","https://openalex.org/W2034120225","https://openalex.org/W2035569593","https://openalex.org/W2049854931","https://openalex.org/W2057350364","https://openalex.org/W2065742859","https://openalex.org/W2067563028","https://openalex.org/W2069020540","https://openalex.org/W2073775872","https://openalex.org/W2079228930","https://openalex.org/W2079321730","https://openalex.org/W2081983626","https://openalex.org/W2082731642","https://openalex.org/W2086271935","https://openalex.org/W2092102437","https://openalex.org/W2093310284","https://openalex.org/W2095344146","https://openalex.org/W2098663074","https://openalex.org/W2104525153","https://openalex.org/W2107010852","https://openalex.org/W2166879101","https://openalex.org/W3184228035","https://openalex.org/W4243045289"],"related_works":["https://openalex.org/W2030841887","https://openalex.org/W1991083800","https://openalex.org/W2079228930","https://openalex.org/W2016809045","https://openalex.org/W4298916003","https://openalex.org/W2949190185","https://openalex.org/W2950616293","https://openalex.org/W2004668152","https://openalex.org/W4302576814","https://openalex.org/W81619192"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
