{"id":"https://openalex.org/W2125029457","doi":"https://doi.org/10.1007/11732990_47","title":"A Parsimony Approach to Genome-Wide Ortholog Assignment","display_name":"A Parsimony Approach to Genome-Wide Ortholog Assignment","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W2125029457","doi":"https://doi.org/10.1007/11732990_47","mag":"2125029457"},"language":"en","primary_location":{"id":"doi:10.1007/11732990_47","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11732990_47","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023445400","display_name":"Zheng Qing Fu","orcid":"https://orcid.org/0000-0003-1519-6192"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zheng Fu","raw_affiliation_strings":["Computer Science Department, University of California, Riverside"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of California, Riverside","institution_ids":["https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102829580","display_name":"Xin Chen","orcid":"https://orcid.org/0000-0003-3304-8943"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Xin Chen","raw_affiliation_strings":["School of Physical and Mathematical Sci., Nanyang Tech. Univ., Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physical and Mathematical Sci., Nanyang Tech. Univ., Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001305218","display_name":"Vladimir Vacic","orcid":"https://orcid.org/0000-0001-6571-2293"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vladimir Vacic","raw_affiliation_strings":["Computer Science Department, University of California, Riverside"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of California, Riverside","institution_ids":["https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Peng Nan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Nan","raw_affiliation_strings":["Shanghai Center for Bioinformatics Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Center for Bioinformatics Technology, Shanghai, China","institution_ids":["https://openalex.org/I4210162648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007870731","display_name":"Yang Zhong","orcid":"https://orcid.org/0000-0002-0517-4582"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yang Zhong","raw_affiliation_strings":["Computer Science Department, University of California, Riverside"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of California, Riverside","institution_ids":["https://openalex.org/I103635307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101911266","display_name":"Tao Jiang","orcid":"https://orcid.org/0000-0003-3833-4498"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Tao Jiang","raw_affiliation_strings":["Computer Science Department, University of California, Riverside","Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of California, Riverside","institution_ids":["https://openalex.org/I103635307"]},{"raw_affiliation_string":"Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"578","last_page":"594"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7882328629493713},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.5791947245597839},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.5200309753417969},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5100594162940979},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5061396956443787},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49052923917770386},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.43527644872665405},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.41868114471435547},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3821261525154114},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3754984736442566},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31937259435653687},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18842646479606628},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.0706862211227417}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7882328629493713},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.5791947245597839},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.5200309753417969},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5100594162940979},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5061396956443787},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49052923917770386},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.43527644872665405},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.41868114471435547},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3821261525154114},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3754984736442566},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31937259435653687},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18842646479606628},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0706862211227417}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/11732990_47","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11732990_47","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.91.128","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.91.128","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.ucr.edu/~zfu/papers/Recomb06.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1507091143","https://openalex.org/W1963740133","https://openalex.org/W1990453950","https://openalex.org/W1999792620","https://openalex.org/W2008856488","https://openalex.org/W2050902903","https://openalex.org/W2096466922","https://openalex.org/W2099956347","https://openalex.org/W2100734112","https://openalex.org/W2102813451","https://openalex.org/W2113035810","https://openalex.org/W2121479060","https://openalex.org/W2124786890","https://openalex.org/W2124908487","https://openalex.org/W2130849966","https://openalex.org/W2133790733","https://openalex.org/W2138578706","https://openalex.org/W2142096960","https://openalex.org/W2145100181","https://openalex.org/W2147795558","https://openalex.org/W2153520172","https://openalex.org/W2158714788","https://openalex.org/W2159266221","https://openalex.org/W2161062388","https://openalex.org/W2167188257","https://openalex.org/W2168783124","https://openalex.org/W2176286246"],"related_works":["https://openalex.org/W2036948647","https://openalex.org/W1493660383","https://openalex.org/W2759519215","https://openalex.org/W4318240630","https://openalex.org/W2353729507","https://openalex.org/W2350466590","https://openalex.org/W1542620732","https://openalex.org/W2346036277","https://openalex.org/W3031625301","https://openalex.org/W4386771068"],"abstract_inverted_index":null,"counts_by_year":[{"year":2016,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
