{"id":"https://openalex.org/W1683546446","doi":"https://doi.org/10.1007/11732242_12","title":"Multiple Sequence Alignment Based on Set Covers","display_name":"Multiple Sequence Alignment Based on Set Covers","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W1683546446","doi":"https://doi.org/10.1007/11732242_12","mag":"1683546446"},"language":"en","primary_location":{"id":"doi:10.1007/11732242_12","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11732242_12","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/q-bio/0412021","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025996738","display_name":"Alexandre H. L. Porto","orcid":null},"institutions":[{"id":"https://openalex.org/I122140584","display_name":"Universidade Federal do Rio de Janeiro","ror":"https://ror.org/03490as77","country_code":"BR","type":"education","lineage":["https://openalex.org/I122140584"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Alexandre H. L. Porto","raw_affiliation_strings":["Programa de Engenharia de Sistemas e Computa\u00e7\u00e3o, COPPE, Universidade Federal do Rio de Janeiro, Caixa Postal 68511, Rio de Janeiro, RJ, 21941-972, Brazil","Programa de Engenharia de Sistemas e Computa\u00e7\u00e3o \u2013 COPPE, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil"],"affiliations":[{"raw_affiliation_string":"Programa de Engenharia de Sistemas e Computa\u00e7\u00e3o, COPPE, Universidade Federal do Rio de Janeiro, Caixa Postal 68511, Rio de Janeiro, RJ, 21941-972, Brazil","institution_ids":["https://openalex.org/I122140584"]},{"raw_affiliation_string":"Programa de Engenharia de Sistemas e Computa\u00e7\u00e3o \u2013 COPPE, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil","institution_ids":["https://openalex.org/I122140584"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080706511","display_name":"Valmir C. Barbosa","orcid":"https://orcid.org/0000-0003-1010-7170"},"institutions":[{"id":"https://openalex.org/I122140584","display_name":"Universidade Federal do Rio de Janeiro","ror":"https://ror.org/03490as77","country_code":"BR","type":"education","lineage":["https://openalex.org/I122140584"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Valmir C. Barbosa","raw_affiliation_strings":["Programa de Engenharia de Sistemas e Computa\u00e7\u00e3o, COPPE, Universidade Federal do Rio de Janeiro, Caixa Postal 68511, Rio de Janeiro, RJ, 21941-972, Brazil","Programa de Engenharia de Sistemas e Computa\u00e7\u00e3o \u2013 COPPE, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil"],"affiliations":[{"raw_affiliation_string":"Programa de Engenharia de Sistemas e Computa\u00e7\u00e3o, COPPE, Universidade Federal do Rio de Janeiro, Caixa Postal 68511, Rio de Janeiro, RJ, 21941-972, Brazil","institution_ids":["https://openalex.org/I122140584"]},{"raw_affiliation_string":"Programa de Engenharia de Sistemas e Computa\u00e7\u00e3o \u2013 COPPE, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil","institution_ids":["https://openalex.org/I122140584"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5025996738"],"corresponding_institution_ids":["https://openalex.org/I122140584"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.16495009,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"127","last_page":"137"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.8051773309707642},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.6946430206298828},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6771453022956848},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.6553097367286682},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6521174311637878},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.6075230836868286},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5836270451545715},{"id":"https://openalex.org/keywords/alphabet","display_name":"Alphabet","score":0.5655586123466492},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.459835946559906},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4487704634666443},{"id":"https://openalex.org/keywords/cover","display_name":"Cover (algebra)","score":0.44583794474601746},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4378066062927246},{"id":"https://openalex.org/keywords/set-cover-problem","display_name":"Set cover problem","score":0.42855194211006165},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.3622231185436249},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.311737596988678},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2951275408267975},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.28459250926971436},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.25606077909469604},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.0726403295993805}],"concepts":[{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.8051773309707642},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.6946430206298828},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6771453022956848},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.6553097367286682},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6521174311637878},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.6075230836868286},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5836270451545715},{"id":"https://openalex.org/C112876837","wikidata":"https://www.wikidata.org/wiki/Q837518","display_name":"Alphabet","level":2,"score":0.5655586123466492},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.459835946559906},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4487704634666443},{"id":"https://openalex.org/C2780428219","wikidata":"https://www.wikidata.org/wiki/Q16952335","display_name":"Cover (algebra)","level":2,"score":0.44583794474601746},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4378066062927246},{"id":"https://openalex.org/C100808899","wikidata":"https://www.wikidata.org/wiki/Q1192100","display_name":"Set cover problem","level":3,"score":0.42855194211006165},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.3622231185436249},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.311737596988678},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2951275408267975},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.28459250926971436},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.25606077909469604},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0726403295993805},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/11732242_12","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11732242_12","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:arXiv.org:q-bio/0412021","is_oa":true,"landing_page_url":"http://arxiv.org/abs/q-bio/0412021","pdf_url":"https://arxiv.org/pdf/q-bio/0412021","source":{"id":"https://openalex.org/S4393918464","display_name":"ArXiv.org","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.243.710","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.243.710","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/q-bio/0412021v1.pdf","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:q-bio/0412021","is_oa":true,"landing_page_url":"http://arxiv.org/abs/q-bio/0412021","pdf_url":"https://arxiv.org/pdf/q-bio/0412021","source":{"id":"https://openalex.org/S4393918464","display_name":"ArXiv.org","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.4399999976158142,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":62,"referenced_works":["https://openalex.org/W57231892","https://openalex.org/W140432077","https://openalex.org/W583936781","https://openalex.org/W938539187","https://openalex.org/W997010268","https://openalex.org/W1497073719","https://openalex.org/W1513998118","https://openalex.org/W1530370735","https://openalex.org/W1532812722","https://openalex.org/W1558845130","https://openalex.org/W1589993665","https://openalex.org/W1792735191","https://openalex.org/W1975257863","https://openalex.org/W1975670646","https://openalex.org/W1982026570","https://openalex.org/W1982996449","https://openalex.org/W1986014242","https://openalex.org/W1988719235","https://openalex.org/W1990061958","https://openalex.org/W1991319607","https://openalex.org/W1992497082","https://openalex.org/W1994414218","https://openalex.org/W2002638840","https://openalex.org/W2005120335","https://openalex.org/W2005313213","https://openalex.org/W2008841836","https://openalex.org/W2009566340","https://openalex.org/W2010638919","https://openalex.org/W2036295979","https://openalex.org/W2044622052","https://openalex.org/W2050802973","https://openalex.org/W2053663417","https://openalex.org/W2056276632","https://openalex.org/W2059513841","https://openalex.org/W2065898587","https://openalex.org/W2073565990","https://openalex.org/W2074231493","https://openalex.org/W2075610668","https://openalex.org/W2081899468","https://openalex.org/W2097818324","https://openalex.org/W2101418959","https://openalex.org/W2102626325","https://openalex.org/W2106882534","https://openalex.org/W2118475569","https://openalex.org/W2121252285","https://openalex.org/W2127774996","https://openalex.org/W2128613007","https://openalex.org/W2132109794","https://openalex.org/W2135326109","https://openalex.org/W2138607329","https://openalex.org/W2141411672","https://openalex.org/W2143210482","https://openalex.org/W2144362290","https://openalex.org/W2147601891","https://openalex.org/W2148311769","https://openalex.org/W2157516796","https://openalex.org/W2162828041","https://openalex.org/W2163860567","https://openalex.org/W2533248932","https://openalex.org/W2610179052","https://openalex.org/W3145128584","https://openalex.org/W3214380909"],"related_works":["https://openalex.org/W96331545","https://openalex.org/W1517600056","https://openalex.org/W1575722140","https://openalex.org/W2036633468","https://openalex.org/W1548907175","https://openalex.org/W2003608043","https://openalex.org/W2160738675","https://openalex.org/W3022556214","https://openalex.org/W4293529780","https://openalex.org/W2405892617"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
