{"id":"https://openalex.org/W2060955779","doi":"https://doi.org/10.1007/11604686_24","title":"Fixed-Parameter Algorithms for Protein Similarity Search Under mRNA Structure Constraints","display_name":"Fixed-Parameter Algorithms for Protein Similarity Search Under mRNA Structure Constraints","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2060955779","doi":"https://doi.org/10.1007/11604686_24","mag":"2060955779"},"language":"en","primary_location":{"id":"doi:10.1007/11604686_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11604686_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036752760","display_name":"Guillaume Blin","orcid":"https://orcid.org/0000-0002-0708-0838"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210165258","display_name":"Laboratoire d'informatique de Nantes Atlantique","ror":"https://ror.org/05487pd16","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I4210165258","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Guillaume Blin","raw_affiliation_strings":["Laboratoire d\u2019Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Cedex 3, Nantes, France","Laboratoire d'Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Cedex 3, Nantes, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Cedex 3, Nantes, France","institution_ids":["https://openalex.org/I4210165258","https://openalex.org/I97188460","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Cedex 3, Nantes, France","institution_ids":["https://openalex.org/I4210165258","https://openalex.org/I97188460","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048361747","display_name":"Guillaume Fertin","orcid":"https://orcid.org/0000-0002-8251-2012"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210165258","display_name":"Laboratoire d'informatique de Nantes Atlantique","ror":"https://ror.org/05487pd16","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I4210165258","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I97188460","display_name":"Nantes Universit\u00e9","ror":"https://ror.org/03gnr7b55","country_code":"FR","type":"education","lineage":["https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Fertin","raw_affiliation_strings":["Laboratoire d\u2019Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Cedex 3, Nantes, France","Laboratoire d'Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Cedex 3, Nantes, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Cedex 3, Nantes, France","institution_ids":["https://openalex.org/I4210165258","https://openalex.org/I97188460","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire d'Informatique de Nantes-Atlantique (LINA), FRE CNRS 2729, Universit\u00e9 de Nantes, 2 rue de la Houssini\u00e8re, 44322 Cedex 3, Nantes, France","institution_ids":["https://openalex.org/I4210165258","https://openalex.org/I97188460","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052950579","display_name":"Danny Hermelin","orcid":"https://orcid.org/0000-0002-6379-0383"},"institutions":[{"id":"https://openalex.org/I91203450","display_name":"University of Haifa","ror":"https://ror.org/02f009v59","country_code":"IL","type":"education","lineage":["https://openalex.org/I91203450"]},{"id":"https://openalex.org/I4210120800","display_name":"Carmel (Israel)","ror":"https://ror.org/02wvcn790","country_code":"IL","type":"company","lineage":["https://openalex.org/I4210120800"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Danny Hermelin","raw_affiliation_strings":["Department of Computer Science, University of Haifa, Mount Carmel, Haifa, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Haifa, Mount Carmel, Haifa, Israel","institution_ids":["https://openalex.org/I91203450","https://openalex.org/I4210120800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027495509","display_name":"St\u00e9phane Vialette","orcid":"https://orcid.org/0000-0003-2308-6970"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"St\u00e9phane Vialette","raw_affiliation_strings":["Laboratoire de Recherche en Informatique (LRI), UMR CNRS 8623, Facult\u00e9 des Sciences d\u2019Orsay, Universit\u00e9 Paris-Sud, 91405, Orsay, France","Laboratoire de Recherche en Informatique (LRI), UMR CNRS 8623, Facult\u00e9 des Sciences d'Orsay, Universit\u00e9 Paris-Sud, 91405, Orsay, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique (LRI), UMR CNRS 8623, Facult\u00e9 des Sciences d\u2019Orsay, Universit\u00e9 Paris-Sud, 91405, Orsay, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210144804"]},{"raw_affiliation_string":"Laboratoire de Recherche en Informatique (LRI), UMR CNRS 8623, Facult\u00e9 des Sciences d'Orsay, Universit\u00e9 Paris-Sud, 91405, Orsay, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210144804"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036752760"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210165258","https://openalex.org/I97188460"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.639,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.90443728,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"271","last_page":"282"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10374","display_name":"Advanced Graph Theory Research","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parameterized-complexity","display_name":"Parameterized complexity","score":0.7788732647895813},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7137251496315002},{"id":"https://openalex.org/keywords/sort","display_name":"sort","score":0.6241326928138733},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6135714650154114},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5823019742965698},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5362241864204407},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5145568251609802},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3706173002719879},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.36877572536468506},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1736532747745514},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.0803486704826355},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06916525959968567}],"concepts":[{"id":"https://openalex.org/C165464430","wikidata":"https://www.wikidata.org/wiki/Q1570441","display_name":"Parameterized complexity","level":2,"score":0.7788732647895813},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7137251496315002},{"id":"https://openalex.org/C88548561","wikidata":"https://www.wikidata.org/wiki/Q347599","display_name":"sort","level":2,"score":0.6241326928138733},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6135714650154114},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5823019742965698},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5362241864204407},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5145568251609802},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3706173002719879},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.36877572536468506},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1736532747745514},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.0803486704826355},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06916525959968567},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11604686_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11604686_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W1496180915","https://openalex.org/W1511188453","https://openalex.org/W1517981311","https://openalex.org/W1570126464","https://openalex.org/W1756652108","https://openalex.org/W1916122658","https://openalex.org/W1969474097","https://openalex.org/W1997180465","https://openalex.org/W1998294201","https://openalex.org/W1999591020","https://openalex.org/W2011538048","https://openalex.org/W2022137727","https://openalex.org/W2029448190","https://openalex.org/W2044281446","https://openalex.org/W2048013200","https://openalex.org/W2060538865","https://openalex.org/W2060955779","https://openalex.org/W2065313571","https://openalex.org/W2065528988","https://openalex.org/W2067194564","https://openalex.org/W2076756368","https://openalex.org/W2083103669","https://openalex.org/W2089471930","https://openalex.org/W2089600895","https://openalex.org/W2092497768","https://openalex.org/W2093092867","https://openalex.org/W2097550055","https://openalex.org/W2101400962","https://openalex.org/W2109297587","https://openalex.org/W2119115989","https://openalex.org/W2137403015","https://openalex.org/W2146922921","https://openalex.org/W2153157180","https://openalex.org/W2166034077","https://openalex.org/W2798588639","https://openalex.org/W2913688336","https://openalex.org/W2950894858","https://openalex.org/W4285719527","https://openalex.org/W4292230561"],"related_works":["https://openalex.org/W2051058708","https://openalex.org/W1494268238","https://openalex.org/W154868527","https://openalex.org/W1983207144","https://openalex.org/W2490706771","https://openalex.org/W2480116122","https://openalex.org/W4255576661","https://openalex.org/W1516574938","https://openalex.org/W2053685668","https://openalex.org/W2914625303"],"abstract_inverted_index":null,"counts_by_year":[{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
