{"id":"https://openalex.org/W1541543831","doi":"https://doi.org/10.1007/11575832_39","title":"A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison","display_name":"A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W1541543831","doi":"https://doi.org/10.1007/11575832_39","mag":"1541543831"},"language":"en","primary_location":{"id":"doi:10.1007/11575832_39","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11575832_39","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.science/hal-00306660","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019003791","display_name":"Julien Allali","orcid":null},"institutions":[{"id":"https://openalex.org/I4210154111","display_name":"Universit\u00e9 Gustave Eiffel","ror":"https://ror.org/03x42jk29","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210154111"]},{"id":"https://openalex.org/I4210152518","display_name":"Laboratoire d'Informatique Gaspard-Monge","ror":"https://ror.org/04t50yk91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142631665","https://openalex.org/I4210145102","https://openalex.org/I4210152518","https://openalex.org/I4210154111","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Julien Allali","raw_affiliation_strings":["Institut Gaspard-Monge, Universit\u00e9 de Marne-la-Vall\u00e9e, Marne-la-Vall\u00e9e, France","LIGM - Laboratoire d'Informatique Gaspard-Monge (Universit\u00e9 Gustave Eiffel, Cit\u00e9 Descartes, B\u00e2timent Copernic, 5 bd Descartes, 77454 Marne-la-Vall\u00e9e Cedex 2 - France)"],"affiliations":[{"raw_affiliation_string":"Institut Gaspard-Monge, Universit\u00e9 de Marne-la-Vall\u00e9e, Marne-la-Vall\u00e9e, France","institution_ids":["https://openalex.org/I4210152518"]},{"raw_affiliation_string":"LIGM - Laboratoire d'Informatique Gaspard-Monge (Universit\u00e9 Gustave Eiffel, Cit\u00e9 Descartes, B\u00e2timent Copernic, 5 bd Descartes, 77454 Marne-la-Vall\u00e9e Cedex 2 - France)","institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I4210154111"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110531794","display_name":"Marie-France Sagot","orcid":null},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR","GB"],"is_corresponding":false,"raw_author_name":"Marie-France Sagot","raw_affiliation_strings":["Inria Rh\u00f4ne-Alpes et LBBE, Universit\u00e9 Claude Bernard, Lyon I, Villeurbanne, France","King\u2019s College, London, UK","Service d'Epid\u00e9miologie et de sant\u00e9 publique (Kremlin Bic\u00eatre - France)","DCS - Department of Computer Science (Strand, London WC2R 2LS, England, United Kingdom. Tel +44 (0)20 7836 5454 - United Kingdom)","HELIX - Computer science and genomics (Universit\u00e9 Claude Bernard (Lyon 1),\r\nCampus DOUA\r\n43, Boulevard du 11 Novembre 1918\r\n69622 Villeurbanne cedex - France)"],"affiliations":[{"raw_affiliation_string":"Inria Rh\u00f4ne-Alpes et LBBE, Universit\u00e9 Claude Bernard, Lyon I, Villeurbanne, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I4210135640"]},{"raw_affiliation_string":"King\u2019s College, London, UK","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Service d'Epid\u00e9miologie et de sant\u00e9 publique (Kremlin Bic\u00eatre - France)","institution_ids":[]},{"raw_affiliation_string":"DCS - Department of Computer Science (Strand, London WC2R 2LS, England, United Kingdom. Tel +44 (0)20 7836 5454 - United Kingdom)","institution_ids":[]},{"raw_affiliation_string":"HELIX - Computer science and genomics (Universit\u00e9 Claude Bernard (Lyon 1),\r\nCampus DOUA\r\n43, Boulevard du 11 Novembre 1918\r\n69622 Villeurbanne cedex - France)","institution_ids":["https://openalex.org/I100532134"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5019003791"],"corresponding_institution_ids":["https://openalex.org/I4210152518","https://openalex.org/I4210154111"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.0554,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.80504701,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"348","last_page":"359"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.637378454208374},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.614479660987854},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5718259215354919},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.4916685223579407},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4668489098548889},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4421083629131317},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.42277365922927856},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13329526782035828},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07814332842826843}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.637378454208374},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.614479660987854},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5718259215354919},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.4916685223579407},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4668489098548889},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4421083629131317},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.42277365922927856},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13329526782035828},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07814332842826843},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1007/11575832_39","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11575832_39","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.385.7003","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.385.7003","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://pbil.univ-lyon1.fr/members/sagot/htdocs/publications/allali2005_spire.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.405.8058","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.405.8058","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://hal.archives-ouvertes.fr/docs/00/30/66/60/PDF/migal.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.60.5568","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.60.5568","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://igm.univ-mlv.fr/~allali/recherche/documents/spire05.ps.gz","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00306660v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00306660","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://link-springer-com.extranet.enpc.fr/chapter/10.1007/11575832_39","raw_type":"Conference papers"},{"id":"pmh:oai:HAL:hal-00427699v1","is_oa":false,"landing_page_url":"https://hal.archives-ouvertes.fr/hal-00427699","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"\\nISSN: \\n0302-9743","raw_type":"\\ninfo:eu-repo/semantics/article\\n"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-00306660v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00306660","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://link-springer-com.extranet.enpc.fr/chapter/10.1007/11575832_39","raw_type":"Conference papers"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W173481235","https://openalex.org/W1511188453","https://openalex.org/W1519859752","https://openalex.org/W1975009259","https://openalex.org/W1976373002","https://openalex.org/W2048001624","https://openalex.org/W2061158331","https://openalex.org/W2075957961","https://openalex.org/W2076963640","https://openalex.org/W2102248503","https://openalex.org/W2112937295","https://openalex.org/W2122899550","https://openalex.org/W2128491712","https://openalex.org/W2134861301","https://openalex.org/W2142056356","https://openalex.org/W2147828873","https://openalex.org/W4234667141"],"related_works":["https://openalex.org/W2045155990","https://openalex.org/W4313163053","https://openalex.org/W3045811229","https://openalex.org/W4300973204","https://openalex.org/W1483408780","https://openalex.org/W4284884309","https://openalex.org/W4388675521","https://openalex.org/W2108135022","https://openalex.org/W3148810651","https://openalex.org/W2898772359"],"abstract_inverted_index":null,"counts_by_year":[{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
