{"id":"https://openalex.org/W1850331524","doi":"https://doi.org/10.1007/11573036_43","title":"Computational Identification of Regulatory Factors Involved in MicroRNA Transcription","display_name":"Computational Identification of Regulatory Factors Involved in MicroRNA Transcription","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W1850331524","doi":"https://doi.org/10.1007/11573036_43","mag":"1850331524"},"language":"en","primary_location":{"id":"doi:10.1007/11573036_43","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11573036_43","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008764552","display_name":"Praveen Sethupathy","orcid":"https://orcid.org/0000-0002-1838-0086"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Praveen Sethupathy","raw_affiliation_strings":["Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, 19104, USA","Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA","Genomics and Computational Biology Graduate Group, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Genomics and Computational Biology Graduate Group, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030831065","display_name":"Molly Megraw","orcid":"https://orcid.org/0000-0001-6793-6151"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Molly Megraw","raw_affiliation_strings":["Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, 19104, USA","Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA","Genomics and Computational Biology Graduate Group, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Genomics and Computational Biology Graduate Group, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052429140","display_name":"M. Inmaculada Barrasa","orcid":"https://orcid.org/0000-0003-3393-4814"},"institutions":[{"id":"https://openalex.org/I169071179","display_name":"Cancer Research Institute","ror":"https://ror.org/02f3xk561","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I169071179"]},{"id":"https://openalex.org/I4210128526","display_name":"UPMC Hillman Cancer Center","ror":"https://ror.org/03bw34a45","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210128526"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Inmaculada Barrasa","raw_affiliation_strings":["Department of Cancer Biology, Abramson Family Cancer Research Institute, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cancer Biology, Abramson Family Cancer Research Institute, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I4210128526","https://openalex.org/I169071179","https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084654971","display_name":"Artemis G. Hatzigeorgiou","orcid":"https://orcid.org/0000-0003-1414-5668"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Artemis G. Hatzigeorgiou","raw_affiliation_strings":["Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, 19104, USA","Department of Computer and Information Science, School of Engineering, University of Pennsylvania, Philadelphia, PA, 19104, USA","Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Computer and Information Science, School of Engineering, University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008764552"],"corresponding_institution_ids":["https://openalex.org/I79576946"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.7746,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.91292135,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"457","last_page":"468"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7852112650871277},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.618850827217102},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5826536417007446},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5792202949523926},{"id":"https://openalex.org/keywords/homeobox","display_name":"Homeobox","score":0.5426703691482544},{"id":"https://openalex.org/keywords/regulatory-sequence","display_name":"Regulatory sequence","score":0.4529886543750763},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.45060065388679504},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.43564337491989136},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.4222540557384491},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4179691672325134},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.41739022731781006},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.33023491501808167}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7852112650871277},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.618850827217102},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5826536417007446},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5792202949523926},{"id":"https://openalex.org/C121587040","wikidata":"https://www.wikidata.org/wiki/Q898769","display_name":"Homeobox","level":4,"score":0.5426703691482544},{"id":"https://openalex.org/C21592294","wikidata":"https://www.wikidata.org/wiki/Q3238407","display_name":"Regulatory sequence","level":4,"score":0.4529886543750763},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.45060065388679504},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.43564337491989136},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.4222540557384491},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4179691672325134},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.41739022731781006},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.33023491501808167},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/11573036_43","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11573036_43","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.100.258","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.100.258","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.med.upenn.edu/gcb/documents/PCI2005Paper.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1969822495","https://openalex.org/W1976854258","https://openalex.org/W1980303046","https://openalex.org/W2013607137","https://openalex.org/W2016294118","https://openalex.org/W2018403717","https://openalex.org/W2024000520","https://openalex.org/W2040191060","https://openalex.org/W2055309264","https://openalex.org/W2056002855","https://openalex.org/W2058059940","https://openalex.org/W2059382687","https://openalex.org/W2086809547","https://openalex.org/W2089142809","https://openalex.org/W2105788966","https://openalex.org/W2120456037","https://openalex.org/W2127367545","https://openalex.org/W2138954682","https://openalex.org/W2140446903","https://openalex.org/W2149009156","https://openalex.org/W2150770935","https://openalex.org/W2157569278","https://openalex.org/W2161149887","https://openalex.org/W2163199119","https://openalex.org/W2167175306","https://openalex.org/W2168157737","https://openalex.org/W2169600668"],"related_works":["https://openalex.org/W2139566393","https://openalex.org/W2581702729","https://openalex.org/W1987805989","https://openalex.org/W4313509691","https://openalex.org/W3108101741","https://openalex.org/W2277277196","https://openalex.org/W2043274041","https://openalex.org/W3131178456","https://openalex.org/W1988612397","https://openalex.org/W4234163953"],"abstract_inverted_index":null,"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
