{"id":"https://openalex.org/W1507497085","doi":"https://doi.org/10.1007/11573036_39","title":"Initial Experiences Porting a Bioinformatics Application to a Graphics Processor","display_name":"Initial Experiences Porting a Bioinformatics Application to a Graphics Processor","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W1507497085","doi":"https://doi.org/10.1007/11573036_39","mag":"1507497085"},"language":"en","primary_location":{"id":"doi:10.1007/11573036_39","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11573036_39","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066457294","display_name":"Maria Charalambous","orcid":null},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]}],"countries":["CY"],"is_corresponding":true,"raw_author_name":"Maria Charalambous","raw_affiliation_strings":["Department of Computer Science, University of Cyprus, 75 Kallipoleos Ave., P.O.Box 20537, 1678, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Cyprus, 75 Kallipoleos Ave., P.O.Box 20537, 1678, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043427541","display_name":"Pedro Trancoso","orcid":"https://orcid.org/0000-0002-2776-9253"},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"Pedro Trancoso","raw_affiliation_strings":["Department of Computer Science, University of Cyprus, 75 Kallipoleos Ave., P.O.Box 20537, 1678, Nicosia, Cyprus"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Cyprus, 75 Kallipoleos Ave., P.O.Box 20537, 1678, Nicosia, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025640090","display_name":"Alexandros Stamatakis","orcid":"https://orcid.org/0000-0003-0353-0691"},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Alexandros Stamatakis","raw_affiliation_strings":["Institute of Computer Science, Foundation for Research and Technology-Hellas, P.O. Box 1385, Heraklion, Crete, GR-771 10, Greece"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Foundation for Research and Technology-Hellas, P.O. Box 1385, Heraklion, Crete, GR-771 10, Greece","institution_ids":["https://openalex.org/I8901234"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5066457294"],"corresponding_institution_ids":["https://openalex.org/I34771391"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":13.1918,"has_fulltext":false,"cited_by_count":78,"citation_normalized_percentile":{"value":0.98837209,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"415","last_page":"425"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/porting","display_name":"Porting","score":0.9142383337020874},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8797838091850281},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.8282216787338257},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.7234640121459961},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.6241087317466736},{"id":"https://openalex.org/keywords/simd","display_name":"SIMD","score":0.5989519357681274},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5144429802894592},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.5117559432983398},{"id":"https://openalex.org/keywords/coprocessor","display_name":"Coprocessor","score":0.48194146156311035},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.44895896315574646},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.41330140829086304},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.3402091860771179},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.24044647812843323},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.10740792751312256}],"concepts":[{"id":"https://openalex.org/C106251023","wikidata":"https://www.wikidata.org/wiki/Q851989","display_name":"Porting","level":3,"score":0.9142383337020874},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8797838091850281},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.8282216787338257},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.7234640121459961},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.6241087317466736},{"id":"https://openalex.org/C150552126","wikidata":"https://www.wikidata.org/wiki/Q339387","display_name":"SIMD","level":2,"score":0.5989519357681274},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5144429802894592},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.5117559432983398},{"id":"https://openalex.org/C86111242","wikidata":"https://www.wikidata.org/wiki/Q859595","display_name":"Coprocessor","level":2,"score":0.48194146156311035},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.44895896315574646},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.41330140829086304},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.3402091860771179},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.24044647812843323},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.10740792751312256},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/11573036_39","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11573036_39","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.86.4437","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.86.4437","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.ucy.ac.cy/~pedro/publications/pci05-raxml.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W148958015","https://openalex.org/W1575092008","https://openalex.org/W1579198843","https://openalex.org/W1982425678","https://openalex.org/W1992122785","https://openalex.org/W1996835973","https://openalex.org/W2032309817","https://openalex.org/W2051793914","https://openalex.org/W2054468361","https://openalex.org/W2102424972","https://openalex.org/W2103546861","https://openalex.org/W2106990934","https://openalex.org/W2117138688","https://openalex.org/W2117752525","https://openalex.org/W2127091535","https://openalex.org/W2128766881","https://openalex.org/W2132540527","https://openalex.org/W2142931159","https://openalex.org/W2154118576","https://openalex.org/W2159159598","https://openalex.org/W2169706611","https://openalex.org/W2997945685","https://openalex.org/W2999104210","https://openalex.org/W4241667468","https://openalex.org/W6632462596"],"related_works":["https://openalex.org/W2621501241","https://openalex.org/W2208757713","https://openalex.org/W3177128669","https://openalex.org/W2393747601","https://openalex.org/W2991848348","https://openalex.org/W2796337470","https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2966127030","https://openalex.org/W3145240193"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
