{"id":"https://openalex.org/W2151139622","doi":"https://doi.org/10.1007/11557067_15","title":"Reaction Motifs in Metabolic Networks","display_name":"Reaction Motifs in Metabolic Networks","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2151139622","doi":"https://doi.org/10.1007/11557067_15","mag":"2151139622"},"language":"en","primary_location":{"id":"doi:10.1007/11557067_15","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11557067_15","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inria.hal.science/inria-00070443","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087487293","display_name":"Vincent Lacroix","orcid":"https://orcid.org/0000-0002-4235-8524"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Vincent Lacroix","raw_affiliation_strings":["Projet Helix, INRIA Rh\u00f4ne-Alpes, France","\u00c9quipe BAOBAB, Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, Universit\u00e9 Lyon I, France"],"affiliations":[{"raw_affiliation_string":"Projet Helix, INRIA Rh\u00f4ne-Alpes, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"\u00c9quipe BAOBAB, Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, Universit\u00e9 Lyon I, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003834309","display_name":"Cristina G. Fernandes","orcid":"https://orcid.org/0000-0002-5259-2859"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Cristina G. Fernandes","raw_affiliation_strings":["Instituto de Matem\u00e1tica e Estat\u00edstica, Universidade de S\u00e3o Paulo, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto de Matem\u00e1tica e Estat\u00edstica, Universidade de S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110531794","display_name":"Marie-France Sagot","orcid":null},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR","GB"],"is_corresponding":false,"raw_author_name":"Marie-France Sagot","raw_affiliation_strings":["Department of Computer Science, King\u2019s College London, England","Projet Helix, INRIA Rh\u00f4ne-Alpes, France","\u00c9quipe BAOBAB, Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, Universit\u00e9 Lyon I, France"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, King\u2019s College London, England","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Projet Helix, INRIA Rh\u00f4ne-Alpes, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"\u00c9quipe BAOBAB, Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, Universit\u00e9 Lyon I, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5087487293"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1326498283","https://openalex.org/I4210135640"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.6384,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.90536863,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"178","last_page":"191"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.8474857807159424},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8174071311950684},{"id":"https://openalex.org/keywords/network-motif","display_name":"Network motif","score":0.6263175010681152},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.52059006690979},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5050600171089172},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.44662222266197205},{"id":"https://openalex.org/keywords/formal-description","display_name":"Formal description","score":0.4389909505844116},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3908483684062958},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.2868082523345947},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2642693519592285},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09952086210250854},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.0955359935760498},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09350991249084473}],"concepts":[{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.8474857807159424},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8174071311950684},{"id":"https://openalex.org/C60723933","wikidata":"https://www.wikidata.org/wiki/Q7001080","display_name":"Network motif","level":3,"score":0.6263175010681152},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.52059006690979},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5050600171089172},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.44662222266197205},{"id":"https://openalex.org/C2985583900","wikidata":"https://www.wikidata.org/wiki/Q722617","display_name":"Formal description","level":2,"score":0.4389909505844116},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3908483684062958},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.2868082523345947},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2642693519592285},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09952086210250854},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0955359935760498},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09350991249084473},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1007/11557067_15","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11557067_15","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.100.5894","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.100.5894","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://biomserv.univ-lyon1.fr/baobab/IMG/pdf/reaction_motifs.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.320.6989","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.320.6989","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://pbil.univ-lyon1.fr/members/sagot/htdocs/publications/lacroix2005_wabi.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00427769v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00427769","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Workshop on Algorithms in Bioinformatics (WABI), Oct 2005, Mallorca, Spain. pp.178-191, &#x27E8;10.1007/11557067_15&#x27E9;","raw_type":"Conference papers"},{"id":"pmh:oai:HAL:inria-00070443v1","is_oa":true,"landing_page_url":"https://inria.hal.science/inria-00070443","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"RR-5563, INRIA. 2005, pp.14","raw_type":"Reports"}],"best_oa_location":{"id":"pmh:oai:HAL:inria-00070443v1","is_oa":true,"landing_page_url":"https://inria.hal.science/inria-00070443","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"RR-5563, INRIA. 2005, pp.14","raw_type":"Reports"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4000000059604645,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1581844353","https://openalex.org/W1592257313","https://openalex.org/W1644749979","https://openalex.org/W1968286256","https://openalex.org/W1976672440","https://openalex.org/W1978486653","https://openalex.org/W1979573559","https://openalex.org/W1995991050","https://openalex.org/W2011039300","https://openalex.org/W2017987256","https://openalex.org/W2052855934","https://openalex.org/W2100438221","https://openalex.org/W2103170157","https://openalex.org/W2104810358","https://openalex.org/W2110699703","https://openalex.org/W2131178894","https://openalex.org/W2142237411","https://openalex.org/W2144885342","https://openalex.org/W2159675211","https://openalex.org/W2166927282","https://openalex.org/W2921811239","https://openalex.org/W3103786587","https://openalex.org/W4256140420","https://openalex.org/W4285719527","https://openalex.org/W6631722374"],"related_works":["https://openalex.org/W3079957389","https://openalex.org/W2796517744","https://openalex.org/W3113308218","https://openalex.org/W2807926763","https://openalex.org/W2951915565","https://openalex.org/W15348386","https://openalex.org/W2090574217","https://openalex.org/W3119507950","https://openalex.org/W1976722121","https://openalex.org/W4205962317"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
