{"id":"https://openalex.org/W1574253784","doi":"https://doi.org/10.1007/11530084_11","title":"Knowledge-Based Integrative Framework for Hypothesis Formation in Biochemical Networks","display_name":"Knowledge-Based Integrative Framework for Hypothesis Formation in Biochemical Networks","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W1574253784","doi":"https://doi.org/10.1007/11530084_11","mag":"1574253784"},"language":"en","primary_location":{"id":"doi:10.1007/11530084_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11530084_11","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032655726","display_name":"Nam Tran","orcid":"https://orcid.org/0000-0002-9488-3988"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nam Tran","raw_affiliation_strings":["Department of Computer Science and Engineering, Ira A. Fulton School of Engineering, Arizona State University, Tempe, AZ, 85281, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Ira A. Fulton School of Engineering, Arizona State University, Tempe, AZ, 85281, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083735830","display_name":"Chitta Baral","orcid":"https://orcid.org/0000-0002-7549-723X"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chitta Baral","raw_affiliation_strings":["Department of Computer Science and Engineering, Ira A. Fulton School of Engineering, Arizona State University, Tempe, AZ, 85281, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Ira A. Fulton School of Engineering, Arizona State University, Tempe, AZ, 85281, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111522180","display_name":"Vinay J. Nagaraj","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vinay J. Nagaraj","raw_affiliation_strings":["Harrington Department of Bioengineering, The Biodesign Institute at Arizona State University, Tempe, AZ, 85281, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harrington Department of Bioengineering, The Biodesign Institute at Arizona State University, Tempe, AZ, 85281, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027594012","display_name":"Lokesh Joshi","orcid":"https://orcid.org/0000-0002-3612-0747"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lokesh Joshi","raw_affiliation_strings":["Harrington Department of Bioengineering, The Biodesign Institute at Arizona State University, Tempe, AZ, 85281, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harrington Department of Bioengineering, The Biodesign Institute at Arizona State University, Tempe, AZ, 85281, USA","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5032655726"],"corresponding_institution_ids":["https://openalex.org/I55732556"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.5276,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.72349375,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"121","last_page":"136"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.8503653407096863},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.790632963180542},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.6535349488258362},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.5740289092063904},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5205686688423157},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.4984707832336426},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4627898037433624},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43032175302505493},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42242738604545593},{"id":"https://openalex.org/keywords/knowledge-based-systems","display_name":"Knowledge-based systems","score":0.410230815410614},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3208645284175873},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15194708108901978}],"concepts":[{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.8503653407096863},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.790632963180542},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.6535349488258362},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.5740289092063904},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5205686688423157},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.4984707832336426},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4627898037433624},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43032175302505493},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42242738604545593},{"id":"https://openalex.org/C115925183","wikidata":"https://www.wikidata.org/wiki/Q1412694","display_name":"Knowledge-based systems","level":2,"score":0.410230815410614},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3208645284175873},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15194708108901978},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11530084_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11530084_11","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W31970964","https://openalex.org/W123868510","https://openalex.org/W169734165","https://openalex.org/W1480255812","https://openalex.org/W1488364561","https://openalex.org/W1493799579","https://openalex.org/W1499561015","https://openalex.org/W1500046621","https://openalex.org/W1501129975","https://openalex.org/W1509180139","https://openalex.org/W1533619369","https://openalex.org/W1578151093","https://openalex.org/W1606891084","https://openalex.org/W1827675272","https://openalex.org/W1972175454","https://openalex.org/W1976873804","https://openalex.org/W1983913286","https://openalex.org/W1986781756","https://openalex.org/W2004440855","https://openalex.org/W2012792908","https://openalex.org/W2020153579","https://openalex.org/W2029617471","https://openalex.org/W2065933707","https://openalex.org/W2079048673","https://openalex.org/W2085037886","https://openalex.org/W2099007946","https://openalex.org/W2108309071","https://openalex.org/W2108401170","https://openalex.org/W2116137060","https://openalex.org/W2120702690","https://openalex.org/W2123280311","https://openalex.org/W2131076907","https://openalex.org/W2133298156","https://openalex.org/W2136636278","https://openalex.org/W2137488129","https://openalex.org/W2137881949","https://openalex.org/W2140083926","https://openalex.org/W2145393087","https://openalex.org/W2147068690","https://openalex.org/W2147714160","https://openalex.org/W2155320925","https://openalex.org/W2155322595","https://openalex.org/W2155606054","https://openalex.org/W2158135312","https://openalex.org/W2159675211","https://openalex.org/W2772521659","https://openalex.org/W4312901145"],"related_works":["https://openalex.org/W1979978247","https://openalex.org/W2160911376","https://openalex.org/W3045387744","https://openalex.org/W1580667900","https://openalex.org/W4237775755","https://openalex.org/W2102929690","https://openalex.org/W1838463810","https://openalex.org/W2592554449","https://openalex.org/W1519580318","https://openalex.org/W2162129255"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
