{"id":"https://openalex.org/W1780903238","doi":"https://doi.org/10.1007/11428848_122","title":"Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures","display_name":"Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W1780903238","doi":"https://doi.org/10.1007/11428848_122","mag":"1780903238"},"language":"en","primary_location":{"id":"doi:10.1007/11428848_122","is_oa":true,"landing_page_url":"https://doi.org/10.1007/11428848_122","pdf_url":"https://link.springer.com/content/pdf/10.1007/11428848_122.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007/11428848_122.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100749729","display_name":"Bin Ma","orcid":"https://orcid.org/0000-0001-7649-6696"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Bin Ma","raw_affiliation_strings":["Department of Computer Science, University of Western Ontario, London, ON, N6A 5B7, Canada","Department of Computer Science, University of Western Ontario, London, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, ON, N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017368130","display_name":"Lieyu Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lieyu Wu","raw_affiliation_strings":["Department of Computer Science, University of Western Ontario, London, ON, N6A 5B7, Canada","Department of Computer Science, University of Western Ontario, London, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, ON, N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081729547","display_name":"Kaizhong Zhang","orcid":"https://orcid.org/0000-0003-1734-5921"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kaizhong Zhang","raw_affiliation_strings":["Department of Computer Science, University of Western Ontario, London, ON, N6A 5B7, Canada","Department of Computer Science, University of Western Ontario, London, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, ON, N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, Canada","institution_ids":["https://openalex.org/I125749732"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I125749732"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"960","last_page":"967"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6864066123962402},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.6792553663253784},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.5105887055397034},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.46350520849227905},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4492477476596832},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40049266815185547},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.37673911452293396},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36391398310661316},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34178200364112854},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32991352677345276},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32138848304748535},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15467354655265808},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14231649041175842},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.08975383639335632},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07515773177146912}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6864066123962402},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.6792553663253784},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.5105887055397034},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.46350520849227905},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4492477476596832},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40049266815185547},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.37673911452293396},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36391398310661316},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34178200364112854},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32991352677345276},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32138848304748535},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15467354655265808},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14231649041175842},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.08975383639335632},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07515773177146912},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11428848_122","is_oa":true,"landing_page_url":"https://doi.org/10.1007/11428848_122","pdf_url":"https://link.springer.com/content/pdf/10.1007/11428848_122.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.1007/11428848_122","is_oa":true,"landing_page_url":"https://doi.org/10.1007/11428848_122","pdf_url":"https://link.springer.com/content/pdf/10.1007/11428848_122.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1780903238.pdf","grobid_xml":"https://content.openalex.org/works/W1780903238.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W631149005","https://openalex.org/W1502621331","https://openalex.org/W1533038909","https://openalex.org/W1588600188","https://openalex.org/W1985818354","https://openalex.org/W1989977771","https://openalex.org/W2029195137","https://openalex.org/W2055043387","https://openalex.org/W2087064593","https://openalex.org/W2102677343","https://openalex.org/W2104972430","https://openalex.org/W2118848941","https://openalex.org/W2119587711","https://openalex.org/W2128591967","https://openalex.org/W2131724426","https://openalex.org/W2131989567","https://openalex.org/W2142375194","https://openalex.org/W2143210482","https://openalex.org/W2151891691","https://openalex.org/W2152520756","https://openalex.org/W2153187042","https://openalex.org/W2157092487","https://openalex.org/W2158714788","https://openalex.org/W2160672912","https://openalex.org/W2950820003","https://openalex.org/W3023950068"],"related_works":["https://openalex.org/W2928838901","https://openalex.org/W4206825711","https://openalex.org/W2253761889","https://openalex.org/W3204091482","https://openalex.org/W2081601977","https://openalex.org/W2114568928","https://openalex.org/W3086268169","https://openalex.org/W2119378770","https://openalex.org/W1543174845","https://openalex.org/W2033650210"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
