{"id":"https://openalex.org/W1528527656","doi":"https://doi.org/10.1007/11428848_118","title":"SWAT: A New Spliced Alignment Tool Tailored for Handling More Sequencing Errors","display_name":"SWAT: A New Spliced Alignment Tool Tailored for Handling More Sequencing Errors","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W1528527656","doi":"https://doi.org/10.1007/11428848_118","mag":"1528527656"},"language":"en","primary_location":{"id":"doi:10.1007/11428848_118","is_oa":true,"landing_page_url":"https://doi.org/10.1007/11428848_118","pdf_url":"https://link.springer.com/content/pdf/10.1007/11428848_118.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://link.springer.com/content/pdf/10.1007/11428848_118.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033510515","display_name":"Yifeng Li","orcid":"https://orcid.org/0000-0002-4873-6928"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yifeng Li","raw_affiliation_strings":["Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, 68198-6805","Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha"],"affiliations":[{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, 68198-6805","institution_ids":["https://openalex.org/I59130452"]},{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047703641","display_name":"Hesham Ali","orcid":"https://orcid.org/0000-0001-6675-7987"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hesham H. Ali","raw_affiliation_strings":["Department of Computer Science, College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, 68182-0116","Department of Computer Science, College of Information Science and Technology, University of Nebraska at Omaha, Omaha,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, College of Information Science and Technology, University of Nebraska at Omaha, Omaha, NE, 68182-0116","institution_ids":["https://openalex.org/I122266389"]},{"raw_affiliation_string":"Department of Computer Science, College of Information Science and Technology, University of Nebraska at Omaha, Omaha,","institution_ids":["https://openalex.org/I122266389"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5033510515"],"corresponding_institution_ids":["https://openalex.org/I59130452"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09828954,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"927","last_page":"935"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7255964279174805},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6109552383422852},{"id":"https://openalex.org/keywords/splice","display_name":"splice","score":0.582335889339447},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5679789781570435},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.5232595205307007},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4597897529602051},{"id":"https://openalex.org/keywords/error-detection-and-correction","display_name":"Error detection and correction","score":0.45740747451782227},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.4510861039161682},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4132581651210785},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4088000953197479},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21319687366485596},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18824994564056396},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1860235333442688},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.14938542246818542}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7255964279174805},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6109552383422852},{"id":"https://openalex.org/C2780989783","wikidata":"https://www.wikidata.org/wiki/Q7578557","display_name":"splice","level":3,"score":0.582335889339447},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5679789781570435},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.5232595205307007},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4597897529602051},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.45740747451782227},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.4510861039161682},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4132581651210785},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4088000953197479},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21319687366485596},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18824994564056396},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1860235333442688},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.14938542246818542}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11428848_118","is_oa":true,"landing_page_url":"https://doi.org/10.1007/11428848_118","pdf_url":"https://link.springer.com/content/pdf/10.1007/11428848_118.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.1007/11428848_118","is_oa":true,"landing_page_url":"https://doi.org/10.1007/11428848_118","pdf_url":"https://link.springer.com/content/pdf/10.1007/11428848_118.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1528527656.pdf","grobid_xml":"https://content.openalex.org/works/W1528527656.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1749816123","https://openalex.org/W1753248846","https://openalex.org/W1994154030","https://openalex.org/W2041956242","https://openalex.org/W2048618925","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2077689651","https://openalex.org/W2089465951","https://openalex.org/W2103717317","https://openalex.org/W2112240593","https://openalex.org/W2137299447","https://openalex.org/W2137986897","https://openalex.org/W2151308110","https://openalex.org/W2782267736"],"related_works":["https://openalex.org/W2068174058","https://openalex.org/W2130439870","https://openalex.org/W2151954452","https://openalex.org/W178291922","https://openalex.org/W2000278701","https://openalex.org/W4200205140","https://openalex.org/W2055681276","https://openalex.org/W2093822539","https://openalex.org/W2166782903","https://openalex.org/W1943031701"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}