{"id":"https://openalex.org/W2131848116","doi":"https://doi.org/10.1007/11415770_40","title":"Predicting Transcription Factor Binding Sites Using Structural Knowledge","display_name":"Predicting Transcription Factor Binding Sites Using Structural Knowledge","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2131848116","doi":"https://doi.org/10.1007/11415770_40","mag":"2131848116"},"language":"en","primary_location":{"id":"doi:10.1007/11415770_40","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11415770_40","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002148475","display_name":"Tommy Kaplan","orcid":"https://orcid.org/0000-0002-1892-5461"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Tommy Kaplan","raw_affiliation_strings":["Dept. of Molecular Genetics and Biotechnology, Hadassah Medical School, The Hebrew University, Jerusalem, 91120, Israel","School of Computer Science, The Hebrew University, Jerusalem, 91904, Israel"],"affiliations":[{"raw_affiliation_string":"Dept. of Molecular Genetics and Biotechnology, Hadassah Medical School, The Hebrew University, Jerusalem, 91120, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"School of Computer Science, The Hebrew University, Jerusalem, 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076999649","display_name":"Nir Friedman","orcid":"https://orcid.org/0000-0002-9678-3550"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Nir Friedman","raw_affiliation_strings":["School of Computer Science, The Hebrew University, Jerusalem, 91904, Israel"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, The Hebrew University, Jerusalem, 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027892876","display_name":"Hanah Margalit","orcid":"https://orcid.org/0000-0002-2274-7784"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Hanah Margalit","raw_affiliation_strings":["Dept. of Molecular Genetics and Biotechnology, Hadassah Medical School, The Hebrew University, Jerusalem, 91120, Israel"],"affiliations":[{"raw_affiliation_string":"Dept. of Molecular Genetics and Biotechnology, Hadassah Medical School, The Hebrew University, Jerusalem, 91120, Israel","institution_ids":["https://openalex.org/I197251160"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5002148475"],"corresponding_institution_ids":["https://openalex.org/I197251160"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.0556,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.81593951,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"522","last_page":"537"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/zinc-finger","display_name":"Zinc finger","score":0.7389155030250549},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.6328797340393066},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5683109760284424},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5539243221282959},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5456047058105469},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.44427984952926636},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.4118295907974243},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34165138006210327},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2998843193054199},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28345298767089844},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2319953441619873},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.15724626183509827},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.07735157012939453}],"concepts":[{"id":"https://openalex.org/C24284526","wikidata":"https://www.wikidata.org/wiki/Q204785","display_name":"Zinc finger","level":4,"score":0.7389155030250549},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.6328797340393066},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5683109760284424},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5539243221282959},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5456047058105469},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.44427984952926636},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4118295907974243},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34165138006210327},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2998843193054199},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28345298767089844},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2319953441619873},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.15724626183509827},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.07735157012939453},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11415770_40","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11415770_40","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322248","display_name":"Israel Academy of Sciences and Humanities","ror":"https://ror.org/03c6c9520"},{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1974901186","https://openalex.org/W2006620181","https://openalex.org/W2026979173","https://openalex.org/W2030395559","https://openalex.org/W2042303986","https://openalex.org/W2048241051","https://openalex.org/W2049633694","https://openalex.org/W2053037206","https://openalex.org/W2053833990","https://openalex.org/W2067007345","https://openalex.org/W2076464177","https://openalex.org/W2082835279","https://openalex.org/W2083052219","https://openalex.org/W2101025813","https://openalex.org/W2129942096","https://openalex.org/W2132291850","https://openalex.org/W2137154596","https://openalex.org/W2140115103","https://openalex.org/W2145619991","https://openalex.org/W2146393977","https://openalex.org/W2146884677","https://openalex.org/W2147236517","https://openalex.org/W2149769193","https://openalex.org/W2151831732","https://openalex.org/W2159883877","https://openalex.org/W2163837597","https://openalex.org/W2166277117","https://openalex.org/W2169837652"],"related_works":["https://openalex.org/W2054338068","https://openalex.org/W4237503679","https://openalex.org/W2992466616","https://openalex.org/W2051736406","https://openalex.org/W2040804282","https://openalex.org/W4251411200","https://openalex.org/W2036927633","https://openalex.org/W2152664145","https://openalex.org/W2153561273","https://openalex.org/W2131580913"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
