{"id":"https://openalex.org/W2127874029","doi":"https://doi.org/10.1007/11415770_4","title":"Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution","display_name":"Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2127874029","doi":"https://doi.org/10.1007/11415770_4","mag":"2127874029"},"language":"en","primary_location":{"id":"doi:10.1007/11415770_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11415770_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035558591","display_name":"Mehmet Koyut\u00fcrk","orcid":"https://orcid.org/0000-0002-3434-5512"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mehmet Koyut\u00fcrk","raw_affiliation_strings":["Department of Computer Sciences, Purdue University, West Lafayette IN#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, Purdue University, West Lafayette IN#TAB#","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019202832","display_name":"Ananth Grama","orcid":"https://orcid.org/0000-0002-9378-9244"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ananth Grama","raw_affiliation_strings":["Dept. of Computer Sciences, Purdue University, West Lafayette, USA","Department of Computer Sciences, Purdue University, West Lafayette IN#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Sciences, Purdue University, West Lafayette, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Department of Computer Sciences, Purdue University, West Lafayette IN#TAB#","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019536160","display_name":"Wojciech Szpankowski","orcid":"https://orcid.org/0000-0001-9062-0067"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wojciech Szpankowski","raw_affiliation_strings":["Dept. of Computer Sciences, Purdue University, West Lafayette, USA","Department of Computer Sciences, Purdue University, West Lafayette IN#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Sciences, Purdue University, West Lafayette, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Department of Computer Sciences, Purdue University, West Lafayette IN#TAB#","institution_ids":["https://openalex.org/I219193219"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":16.3831,"has_fulltext":false,"cited_by_count":75,"citation_normalized_percentile":{"value":0.99160183,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"48","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9750999808311462,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7813825607299805},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7741381525993347},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.6440722942352295},{"id":"https://openalex.org/keywords/subnet","display_name":"Subnet","score":0.6241592764854431},{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.5510181784629822},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5446377396583557},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.4244953989982605},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3466966152191162},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30513450503349304},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09590139985084534}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7813825607299805},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7741381525993347},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.6440722942352295},{"id":"https://openalex.org/C21099817","wikidata":"https://www.wikidata.org/wiki/Q7631721","display_name":"Subnet","level":2,"score":0.6241592764854431},{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.5510181784629822},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5446377396583557},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.4244953989982605},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3466966152191162},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30513450503349304},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09590139985084534},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/11415770_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11415770_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.146.2414","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.146.2414","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ai.stanford.edu/~serafim/CS374_2005/Papers/ProteinNetworks_Alignment.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.421.5586","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.421.5586","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://engr.case.edu/koyuturk_mehmet/publications/ppi_recomb05.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.75.1086","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.75.1086","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.purdue.edu/homes/spa/papers/recomb05.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1644749979","https://openalex.org/W1965479796","https://openalex.org/W1974640858","https://openalex.org/W1990605847","https://openalex.org/W2008620264","https://openalex.org/W2036836182","https://openalex.org/W2037036397","https://openalex.org/W2063639254","https://openalex.org/W2066235893","https://openalex.org/W2079007492","https://openalex.org/W2081306806","https://openalex.org/W2084619201","https://openalex.org/W2084668512","https://openalex.org/W2085135852","https://openalex.org/W2087064593","https://openalex.org/W2098045561","https://openalex.org/W2100438221","https://openalex.org/W2106202847","https://openalex.org/W2106882534","https://openalex.org/W2117526623","https://openalex.org/W2123733630","https://openalex.org/W2125179362","https://openalex.org/W2126969584","https://openalex.org/W2132582966","https://openalex.org/W2133894503","https://openalex.org/W2149310258","https://openalex.org/W2155320925","https://openalex.org/W2156966633","https://openalex.org/W2158714788","https://openalex.org/W2159416234","https://openalex.org/W2167188257","https://openalex.org/W2167222948","https://openalex.org/W2167680767","https://openalex.org/W2167869241","https://openalex.org/W2168702870","https://openalex.org/W2169526870","https://openalex.org/W4255994287"],"related_works":["https://openalex.org/W2102539527","https://openalex.org/W4292634579","https://openalex.org/W2356206668","https://openalex.org/W2131631951","https://openalex.org/W2130707537","https://openalex.org/W2105155969","https://openalex.org/W1977409556","https://openalex.org/W2361602549","https://openalex.org/W4362683600","https://openalex.org/W3200778902"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
