{"id":"https://openalex.org/W1971172215","doi":"https://doi.org/10.1007/11415770_12","title":"RNA-RNA Interaction Prediction and Antisense RNA Target Search","display_name":"RNA-RNA Interaction Prediction and Antisense RNA Target Search","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W1971172215","doi":"https://doi.org/10.1007/11415770_12","mag":"1971172215"},"language":"en","primary_location":{"id":"doi:10.1007/11415770_12","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11415770_12","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074885623","display_name":"Can Alkan","orcid":"https://orcid.org/0000-0002-5443-0706"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA","US"],"is_corresponding":true,"raw_author_name":"Can Alkan","raw_affiliation_strings":["Department of EECS, Case Western Reserve University, Cleveland, OH, 44106, USA","School of Computing Science, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada"],"affiliations":[{"raw_affiliation_string":"Department of EECS, Case Western Reserve University, Cleveland, OH, 44106, USA","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027896699","display_name":"Emre Karako\u00e7","orcid":"https://orcid.org/0000-0002-2324-8127"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Emre Karako\u00e7","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091606904","display_name":"Joseph H. Nadeau","orcid":"https://orcid.org/0000-0002-9570-7361"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph H. Nadeau","raw_affiliation_strings":["Department of Genetics, Case Western Reserve University, Cleveland, OH, 44106, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Case Western Reserve University, Cleveland, OH, 44106, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102972238","display_name":"S. Cenk \u015eahinalp","orcid":"https://orcid.org/0000-0002-2170-2808"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"S. Cenk \u015eahinalp","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081729547","display_name":"Kaizhong Zhang","orcid":"https://orcid.org/0000-0003-1734-5921"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kaizhong Zhang","raw_affiliation_strings":["Department of Computer Science, University of Western Ontario, London, ON, N6A 5B7, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, ON, N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5074885623"],"corresponding_institution_ids":["https://openalex.org/I18014758","https://openalex.org/I58956616"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.5834,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.85845315,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"152","last_page":"171"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7971700429916382},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.6067469716072083},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5973367691040039},{"id":"https://openalex.org/keywords/antisense-rna","display_name":"Antisense RNA","score":0.5600273013114929},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.49995994567871094},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4869597852230072},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4808979034423828},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.454534113407135},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.44629132747650146},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3709868788719177},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30102306604385376}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7971700429916382},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.6067469716072083},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5973367691040039},{"id":"https://openalex.org/C202416437","wikidata":"https://www.wikidata.org/wiki/Q423832","display_name":"Antisense RNA","level":4,"score":0.5600273013114929},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.49995994567871094},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4869597852230072},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4808979034423828},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.454534113407135},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.44629132747650146},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3709868788719177},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30102306604385376}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/11415770_12","is_oa":false,"landing_page_url":"https://doi.org/10.1007/11415770_12","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4000000059604645,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1873825682","https://openalex.org/W1920303762","https://openalex.org/W1966857768","https://openalex.org/W1967586899","https://openalex.org/W1968245790","https://openalex.org/W1975195834","https://openalex.org/W1982487704","https://openalex.org/W2000191287","https://openalex.org/W2005847231","https://openalex.org/W2009818318","https://openalex.org/W2013195357","https://openalex.org/W2017313617","https://openalex.org/W2025763720","https://openalex.org/W2060123499","https://openalex.org/W2082317627","https://openalex.org/W2107235611","https://openalex.org/W2109297587","https://openalex.org/W2123241418","https://openalex.org/W2140618402","https://openalex.org/W2151922790","https://openalex.org/W2154846630","https://openalex.org/W2164700062","https://openalex.org/W2167557255"],"related_works":["https://openalex.org/W1472344963","https://openalex.org/W3093937951","https://openalex.org/W2033076618","https://openalex.org/W2554722417","https://openalex.org/W2470187006","https://openalex.org/W2058984380","https://openalex.org/W1988125422","https://openalex.org/W1925057662","https://openalex.org/W2581348958","https://openalex.org/W4385457841"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
