{"id":"https://openalex.org/W2397877732","doi":"https://doi.org/10.1007/10991541_24","title":"Computing Protein Structures from Electron Density Maps: The Missing Fragment Problem","display_name":"Computing Protein Structures from Electron Density Maps: The Missing Fragment Problem","publication_year":2005,"publication_date":"2005-10-11","ids":{"openalex":"https://openalex.org/W2397877732","doi":"https://doi.org/10.1007/10991541_24","mag":"2397877732"},"language":"en","primary_location":{"id":"doi:10.1007/10991541_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/10991541_24","pdf_url":null,"source":{"id":"https://openalex.org/S4210185684","display_name":"Springer tracts in advanced robotics","issn_l":"1610-742X","issn":["1610-742X","1610-7438"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Springer Tracts in Advanced Robotics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026541269","display_name":"Itay Lotan","orcid":"https://orcid.org/0000-0002-4015-9783"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Itay Lotan","raw_affiliation_strings":["Computer Science Department, Stanford University, Stanford CA 94305.,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Stanford University, Stanford CA 94305.,","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024202025","display_name":"Henry van den Bedem","orcid":"https://orcid.org/0000-0003-2358-841X"},"institutions":[{"id":"https://openalex.org/I2801935854","display_name":"SLAC National Accelerator Laboratory","ror":"https://ror.org/05gzmn429","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I4210120900","display_name":"Stanford Synchrotron Radiation Lightsource","ror":"https://ror.org/02vzbm991","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I4210120900","https://openalex.org/I97018004","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Henry van den Bedem","raw_affiliation_strings":["Joint Center for Structural Genomics, Stanford Synchrotron Radiation Laboratory, Stanford Linear Accelerator Center, 2575 Sand Hill Road, Menlo Park CA 94025,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint Center for Structural Genomics, Stanford Synchrotron Radiation Laboratory, Stanford Linear Accelerator Center, 2575 Sand Hill Road, Menlo Park CA 94025,","institution_ids":["https://openalex.org/I4210120900","https://openalex.org/I4210091204","https://openalex.org/I2801935854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078538865","display_name":"Ashley M. Deacon","orcid":null},"institutions":[{"id":"https://openalex.org/I2801935854","display_name":"SLAC National Accelerator Laboratory","ror":"https://ror.org/05gzmn429","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I4210120900","display_name":"Stanford Synchrotron Radiation Lightsource","ror":"https://ror.org/02vzbm991","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I4210120900","https://openalex.org/I97018004","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashley M. Deacon","raw_affiliation_strings":["Joint Center for Structural Genomics, Stanford Synchrotron Radiation Laboratory, Stanford Linear Accelerator Center, 2575 Sand Hill Road, Menlo Park CA 94025,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint Center for Structural Genomics, Stanford Synchrotron Radiation Laboratory, Stanford Linear Accelerator Center, 2575 Sand Hill Road, Menlo Park CA 94025,","institution_ids":["https://openalex.org/I4210120900","https://openalex.org/I4210091204","https://openalex.org/I2801935854"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5114247093","display_name":"Jean\u2010Claude Latombe","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jean-Claude Latombe","raw_affiliation_strings":["Computer Science Department, Stanford University, Stanford CA 94305.,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Stanford University, Stanford CA 94305.,","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":14.2211,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.98609337,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"345","last_page":"360"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5911206007003784},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5688492655754089},{"id":"https://openalex.org/keywords/inverse","display_name":"Inverse","score":0.5599192380905151},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5108129978179932},{"id":"https://openalex.org/keywords/closure","display_name":"Closure (psychology)","score":0.49222031235694885},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.46312886476516724},{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.44967371225357056},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44197288155555725},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.4406015872955322},{"id":"https://openalex.org/keywords/low-resolution","display_name":"Low resolution","score":0.4313846230506897},{"id":"https://openalex.org/keywords/completeness","display_name":"Completeness (order theory)","score":0.41879579424858093},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24587956070899963},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.18606501817703247},{"id":"https://openalex.org/keywords/high-resolution","display_name":"High resolution","score":0.17416912317276},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.12474307417869568},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.10625094175338745},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07583349943161011}],"concepts":[{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5911206007003784},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5688492655754089},{"id":"https://openalex.org/C207467116","wikidata":"https://www.wikidata.org/wiki/Q4385666","display_name":"Inverse","level":2,"score":0.5599192380905151},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5108129978179932},{"id":"https://openalex.org/C146834321","wikidata":"https://www.wikidata.org/wiki/Q2979672","display_name":"Closure (psychology)","level":2,"score":0.49222031235694885},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.46312886476516724},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.44967371225357056},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44197288155555725},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.4406015872955322},{"id":"https://openalex.org/C3019883945","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"Low resolution","level":3,"score":0.4313846230506897},{"id":"https://openalex.org/C17231256","wikidata":"https://www.wikidata.org/wiki/Q5156540","display_name":"Completeness (order theory)","level":2,"score":0.41879579424858093},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24587956070899963},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.18606501817703247},{"id":"https://openalex.org/C3020199158","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"High resolution","level":2,"score":0.17416912317276},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.12474307417869568},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.10625094175338745},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07583349943161011},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/10991541_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/10991541_24","pdf_url":null,"source":{"id":"https://openalex.org/S4210185684","display_name":"Springer tracts in advanced robotics","issn_l":"1610-742X","issn":["1610-742X","1610-7438"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Springer Tracts in Advanced Robotics","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"No poverty","id":"https://metadata.un.org/sdg/1","score":0.7099999785423279}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W88477119","https://openalex.org/W1492098934","https://openalex.org/W1521025514","https://openalex.org/W1581518593","https://openalex.org/W1606011614","https://openalex.org/W1863997888","https://openalex.org/W1971853518","https://openalex.org/W1978995528","https://openalex.org/W1980374511","https://openalex.org/W1981745143","https://openalex.org/W1984753840","https://openalex.org/W1987836768","https://openalex.org/W1990698302","https://openalex.org/W1996230572","https://openalex.org/W1998470735","https://openalex.org/W2000908837","https://openalex.org/W2002992883","https://openalex.org/W2003331005","https://openalex.org/W2012364120","https://openalex.org/W2013785414","https://openalex.org/W2018562664","https://openalex.org/W2019476648","https://openalex.org/W2024060531","https://openalex.org/W2027638447","https://openalex.org/W2038840577","https://openalex.org/W2052056634","https://openalex.org/W2056760934","https://openalex.org/W2057591350","https://openalex.org/W2061346531","https://openalex.org/W2063001312","https://openalex.org/W2067484689","https://openalex.org/W2076694118","https://openalex.org/W2088774638","https://openalex.org/W2092987196","https://openalex.org/W2097433753","https://openalex.org/W2097684618","https://openalex.org/W2103150552","https://openalex.org/W2106688555","https://openalex.org/W2110333200","https://openalex.org/W2110890402","https://openalex.org/W2112474089","https://openalex.org/W2115041445","https://openalex.org/W2116275717","https://openalex.org/W2117239890","https://openalex.org/W2118077786","https://openalex.org/W2125793518","https://openalex.org/W2128990851","https://openalex.org/W2130479394","https://openalex.org/W2131011485","https://openalex.org/W2133537805","https://openalex.org/W2137604324","https://openalex.org/W2139583487","https://openalex.org/W2140616356","https://openalex.org/W2145180780","https://openalex.org/W2146097584","https://openalex.org/W2149186423","https://openalex.org/W2151199993","https://openalex.org/W2157052713","https://openalex.org/W2163426622","https://openalex.org/W2163689612","https://openalex.org/W2166110558","https://openalex.org/W2169564405","https://openalex.org/W2170584833","https://openalex.org/W2993708662"],"related_works":["https://openalex.org/W1973480752","https://openalex.org/W2805502594","https://openalex.org/W4253208712","https://openalex.org/W31439402","https://openalex.org/W3132641048","https://openalex.org/W2217679042","https://openalex.org/W1603677234","https://openalex.org/W2525971763","https://openalex.org/W2984753899","https://openalex.org/W2783178962"],"abstract_inverted_index":null,"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
