{"id":"https://openalex.org/W2104581408","doi":"https://doi.org/10.1007/1-4020-4179-9_50","title":"3D VISUALIZATION OF GENE CLUSTERS","display_name":"3D VISUALIZATION OF GENE CLUSTERS","publication_year":2006,"publication_date":"2006-03-10","ids":{"openalex":"https://openalex.org/W2104581408","doi":"https://doi.org/10.1007/1-4020-4179-9_50","mag":"2104581408"},"language":"en","primary_location":{"id":"doi:10.1007/1-4020-4179-9_50","is_oa":false,"landing_page_url":"https://doi.org/10.1007/1-4020-4179-9_50","pdf_url":null,"source":{"id":"https://openalex.org/S4306463519","display_name":"Kluwer Academic Publishers eBooks","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"ebook platform"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Imaging and Vision","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034040010","display_name":"Leishi Zhang","orcid":"https://orcid.org/0000-0002-3158-2328"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Leishi Zhang","raw_affiliation_strings":["Department of Information Systems and Computing, Brunel University, Uxbridge, Middlesex, UB8 3PH, U.K","Department of Information Systems and Computing, Brunel University, Uxbridge, U.K","*Brunel University"],"affiliations":[{"raw_affiliation_string":"Department of Information Systems and Computing, Brunel University, Uxbridge, Middlesex, UB8 3PH, U.K","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"Department of Information Systems and Computing, Brunel University, Uxbridge, U.K","institution_ids":[]},{"raw_affiliation_string":"*Brunel University","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100375376","display_name":"Xiaohui Liu","orcid":"https://orcid.org/0000-0003-1589-1267"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Xiaohui Liu","raw_affiliation_strings":["Department of Information Systems and Computing, Brunel University, Uxbridge, Middlesex, UB8 3PH, U.K","Department of Information Systems and Computing, Brunel University, Uxbridge, U.K","*Brunel University"],"affiliations":[{"raw_affiliation_string":"Department of Information Systems and Computing, Brunel University, Uxbridge, Middlesex, UB8 3PH, U.K","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"Department of Information Systems and Computing, Brunel University, Uxbridge, U.K","institution_ids":[]},{"raw_affiliation_string":"*Brunel University","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019915591","display_name":"Weiguo Sheng","orcid":"https://orcid.org/0000-0001-9680-5126"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Weiguo Sheng","raw_affiliation_strings":["Department of Information Systems and Computing, Brunel University, Uxbridge, Middlesex, UB8 3PH, U.K","Department of Information Systems and Computing, Brunel University, Uxbridge, U.K","*Brunel University"],"affiliations":[{"raw_affiliation_string":"Department of Information Systems and Computing, Brunel University, Uxbridge, Middlesex, UB8 3PH, U.K","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"Department of Information Systems and Computing, Brunel University, Uxbridge, U.K","institution_ids":[]},{"raw_affiliation_string":"*Brunel University","institution_ids":["https://openalex.org/I59433898"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5034040010"],"corresponding_institution_ids":["https://openalex.org/I59433898"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22749809,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"349","last_page":"354"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9642000198364258,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8025394678115845},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.7269294261932373},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6202642917633057},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5928309559822083},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.5235226154327393},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4895828664302826},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4865259528160095},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.48525381088256836},{"id":"https://openalex.org/keywords/graph-partition","display_name":"Graph partition","score":0.4715820848941803},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.469310998916626},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.45790788531303406},{"id":"https://openalex.org/keywords/layer","display_name":"Layer (electronics)","score":0.44404298067092896},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36108464002609253},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32927101850509644},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27078479528427124},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17938929796218872},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.07360249757766724}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8025394678115845},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.7269294261932373},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6202642917633057},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5928309559822083},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.5235226154327393},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4895828664302826},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4865259528160095},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.48525381088256836},{"id":"https://openalex.org/C48903430","wikidata":"https://www.wikidata.org/wiki/Q491370","display_name":"Graph partition","level":3,"score":0.4715820848941803},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.469310998916626},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.45790788531303406},{"id":"https://openalex.org/C2779227376","wikidata":"https://www.wikidata.org/wiki/Q6505497","display_name":"Layer (electronics)","level":2,"score":0.44404298067092896},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36108464002609253},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32927101850509644},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27078479528427124},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17938929796218872},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.07360249757766724},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/1-4020-4179-9_50","is_oa":false,"landing_page_url":"https://doi.org/10.1007/1-4020-4179-9_50","pdf_url":null,"source":{"id":"https://openalex.org/S4306463519","display_name":"Kluwer Academic Publishers eBooks","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"ebook platform"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Imaging and Vision","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.670.1579","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.670.1579","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.dbvis.de/uploadedFiles/292.pdf","raw_type":"text"},{"id":"pmh:oai:kar.kent.ac.uk:14498","is_oa":false,"landing_page_url":"https://kar.kent.ac.uk/14498/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196264","display_name":"Kent Academic Repository (University of Kent)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20581793","host_organization_name":"University of Kent","host_organization_lineage":["https://openalex.org/I20581793"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book section"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1020953626","https://openalex.org/W1503013560","https://openalex.org/W1581875325","https://openalex.org/W2066495677","https://openalex.org/W2075220720","https://openalex.org/W2099645570","https://openalex.org/W2167482691","https://openalex.org/W2256067809","https://openalex.org/W3022981850","https://openalex.org/W6777060225"],"related_works":["https://openalex.org/W2346931493","https://openalex.org/W2903996962","https://openalex.org/W4312076339","https://openalex.org/W2798726020","https://openalex.org/W2583811263","https://openalex.org/W3134869969","https://openalex.org/W45302457","https://openalex.org/W2782513589","https://openalex.org/W3173312668","https://openalex.org/W2810695303"],"abstract_inverted_index":{"An":[0],"essential":[1],"step":[2],"in":[3,55,98,108,117],"the":[4,12,36,52,63,83,90,104,119],"analysis":[5],"of":[6,14],"gene":[7,15,53],"expression":[8,20],"profile":[9],"data":[10],"is":[11,57,113],"detection":[13],"groups":[16],"that":[17],"have":[18,26],"similar":[19],"patterns.":[21],"Although":[22],"many":[23],"clustering":[24,37,121],"algorithms":[25],"been":[27],"proposed":[28],"for":[29,50],"such":[30,33],"task,":[31],"problems":[32],"as":[34],"visualizing":[35],"results":[38,122],"are":[39],"still":[40],"not":[41,114],"satisfactorily":[42],"addressed.":[43],"In":[44],"this":[45],"paper,":[46],"a":[47,66,69,86],"novel":[48],"methodology":[49],"drawing":[51],"clusters":[54],"3D":[56],"proposed.":[58],"The":[59,93],"algorithm":[60],"firstly":[61],"allocates":[62,81],"genes":[64],"within":[65,85],"cluster":[67],"to":[68,128],"local":[70],"area":[71,88],"\u2013":[72],"InfoCube":[73],"using":[74,89],"Force-Directed":[75],"Placement":[76],"Spring":[77],"Model;":[78],"it":[79],"then":[80],"all":[82],"InfoCubes":[84],"global":[87],"same":[91],"method.":[92],"bottom-up":[94],"approach":[95],"saves":[96],"time":[97],"coordinates\u2019":[99],"computation":[100],"and":[101],"successfully":[102],"avoids":[103],"space":[105],"partition":[106],"problem":[107],"multi-layer":[109,131],"graph":[110],"drawing.":[111],"It":[112],"only":[115],"effective":[116],"displaying":[118],"double-layer":[120],"but":[123],"also":[124],"can":[125],"be":[126],"extended":[127],"display":[129],"other":[130],"graphs":[132],"with":[133],"hierarchical":[134],"relationships.":[135]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}