{"id":"https://openalex.org/W1512585278","doi":"https://doi.org/10.1002/sam.11261","title":"Prediction using hierarchical data: Applications for automated detection of cervical cancer","display_name":"Prediction using hierarchical data: Applications for automated detection of cervical cancer","publication_year":2015,"publication_date":"2015-04-01","ids":{"openalex":"https://openalex.org/W1512585278","doi":"https://doi.org/10.1002/sam.11261","mag":"1512585278","pmid":"https://pubmed.ncbi.nlm.nih.gov/26617681"},"language":"en","primary_location":{"id":"doi:10.1002/sam.11261","is_oa":false,"landing_page_url":"https://doi.org/10.1002/sam.11261","pdf_url":null,"source":{"id":"https://openalex.org/S40788348","display_name":"Statistical Analysis and Data Mining The ASA Data Science Journal","issn_l":"1932-1864","issn":["1932-1864","1932-1872"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Statistical Analysis and Data Mining: The ASA Data Science Journal","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4659436","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087909054","display_name":"Jos\u00e9\u2010Miguel Yamal","orcid":"https://orcid.org/0000-0003-2505-0090"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jose\u2010Miguel Yamal","raw_affiliation_strings":["Department of Biostatistics The University of Texas School of Public Health 1200 Herman Pressler, Suite W\u2010928 Houston, TX 77030 USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics The University of Texas School of Public Health 1200 Herman Pressler, Suite W\u2010928 Houston, TX 77030 USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074008006","display_name":"Martial Guillaud","orcid":"https://orcid.org/0000-0001-8982-2489"},"institutions":[{"id":"https://openalex.org/I4210110979","display_name":"Occupational Cancer Research Centre","ror":"https://ror.org/01vs1wb25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210110979"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Martial Guillaud","raw_affiliation_strings":["Department of Integrative Oncology, British Columbia Cancer Research Centre 675 West 10th Ave Vancouver, BC, V5Z 1L3 Canada"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Oncology, British Columbia Cancer Research Centre 675 West 10th Ave Vancouver, BC, V5Z 1L3 Canada","institution_ids":["https://openalex.org/I4210110979"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057733680","display_name":"E. Neely Atkinson","orcid":null},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. Neely Atkinson","raw_affiliation_strings":["Department of Statistics Rice University 6100 Main St. Houston, TX 77005 USA"],"affiliations":[{"raw_affiliation_string":"Department of Statistics Rice University 6100 Main St. Houston, TX 77005 USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026010782","display_name":"Michele Follen","orcid":"https://orcid.org/0000-0001-9628-9475"},"institutions":[{"id":"https://openalex.org/I2802707398","display_name":"Brookdale University Hospital and Medical Center","ror":"https://ror.org/0065vkd37","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802707398"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michele Follen","raw_affiliation_strings":["Department of Obstetrics and Gynecology, Brookdale Hospital and Medical Center 555 Rockaway Pkwy Brooklyn, NY 11212 USA"],"affiliations":[{"raw_affiliation_string":"Department of Obstetrics and Gynecology, Brookdale Hospital and Medical Center 555 Rockaway Pkwy Brooklyn, NY 11212 USA","institution_ids":["https://openalex.org/I2802707398"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015304965","display_name":"Calum MacAulay","orcid":"https://orcid.org/0000-0003-4440-2792"},"institutions":[{"id":"https://openalex.org/I4210110979","display_name":"Occupational Cancer Research Centre","ror":"https://ror.org/01vs1wb25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210110979"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Calum MacAulay","raw_affiliation_strings":["Department of Integrative Oncology, British Columbia Cancer Research Centre 675 West 10th Ave Vancouver, BC, V5Z 1L3 Canada"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Oncology, British Columbia Cancer Research Centre 675 West 10th Ave Vancouver, BC, V5Z 1L3 Canada","institution_ids":["https://openalex.org/I4210110979"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023768230","display_name":"Scott B. Cantor","orcid":"https://orcid.org/0000-0002-7072-6048"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott B. Cantor","raw_affiliation_strings":["Department of Health Services Research The University of Texas MD Anderson Cancer Center P.O. Box 301402, Unit 1444 Houston, TX 77230\u20101402 USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Services Research The University of Texas MD Anderson Cancer Center P.O. Box 301402, Unit 1444 Houston, TX 77230\u20101402 USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108688637","display_name":"Dennis D. Cox","orcid":null},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dennis D. Cox","raw_affiliation_strings":["Department of Statistics Rice University 6100 Main St. Houston, TX 77005 USA"],"affiliations":[{"raw_affiliation_string":"Department of Statistics Rice University 6100 Main St. Houston, TX 77005 USA","institution_ids":["https://openalex.org/I74775410"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5087909054"],"corresponding_institution_ids":[],"apc_list":{"value":3760,"currency":"USD","value_usd":3760},"apc_paid":null,"fwci":1.3387,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.85485703,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"8","issue":"2","first_page":"65","last_page":"74"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.9731000065803528,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.644350528717041},{"id":"https://openalex.org/keywords/papanicolaou-stain","display_name":"Papanicolaou stain","score":0.5881563425064087},{"id":"https://openalex.org/keywords/cervical-cancer","display_name":"Cervical cancer","score":0.5296387672424316},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4699903726577759},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41699162125587463},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.41678667068481445},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3650628924369812},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.31568610668182373},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2764694094657898}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.644350528717041},{"id":"https://openalex.org/C65051434","wikidata":"https://www.wikidata.org/wiki/Q3123079","display_name":"Papanicolaou stain","level":4,"score":0.5881563425064087},{"id":"https://openalex.org/C2778220009","wikidata":"https://www.wikidata.org/wiki/Q160105","display_name":"Cervical cancer","level":3,"score":0.5296387672424316},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4699903726577759},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41699162125587463},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.41678667068481445},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3650628924369812},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.31568610668182373},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2764694094657898},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1002/sam.11261","is_oa":false,"landing_page_url":"https://doi.org/10.1002/sam.11261","pdf_url":null,"source":{"id":"https://openalex.org/S40788348","display_name":"Statistical Analysis and Data Mining The ASA Data Science Journal","issn_l":"1932-1864","issn":["1932-1864","1932-1872"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Statistical Analysis and Data Mining: The ASA Data Science Journal","raw_type":"journal-article"},{"id":"pmid:26617681","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26617681","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Statistical analysis and data mining","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4659436","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4659436","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Stat Anal Data Min","raw_type":"Text"},{"id":"pmh:oai:scholarship.rice.edu:1911/94817","is_oa":false,"landing_page_url":"http://hdl.handle.net/1911/94817","pdf_url":null,"source":{"id":"https://openalex.org/S4306400220","display_name":"Rice University's digital scholarship archive (Rice University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I74775410","host_organization_name":"Rice University","host_organization_lineage":["https://openalex.org/I74775410"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4659436","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4659436","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Stat Anal Data Min","raw_type":"Text"},"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"},{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3335825613","display_name":null,"funder_award_id":"P01 CA-82710","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W172541795","https://openalex.org/W597676112","https://openalex.org/W1488118404","https://openalex.org/W1507020114","https://openalex.org/W1539462193","https://openalex.org/W1594031697","https://openalex.org/W1594598895","https://openalex.org/W1770387804","https://openalex.org/W1915008591","https://openalex.org/W1958920910","https://openalex.org/W1963695011","https://openalex.org/W1964818972","https://openalex.org/W1965885975","https://openalex.org/W1969660903","https://openalex.org/W1982008630","https://openalex.org/W1987562072","https://openalex.org/W1988342205","https://openalex.org/W1994642659","https://openalex.org/W2011832962","https://openalex.org/W2014374971","https://openalex.org/W2025809882","https://openalex.org/W2035411063","https://openalex.org/W2041176483","https://openalex.org/W2064292292","https://openalex.org/W2087985347","https://openalex.org/W2099954138","https://openalex.org/W2100420476","https://openalex.org/W2101095383","https://openalex.org/W2113739852","https://openalex.org/W2116314042","https://openalex.org/W2122825543","https://openalex.org/W2137283541","https://openalex.org/W2154348051","https://openalex.org/W2155806188","https://openalex.org/W2162057362","https://openalex.org/W2170814573","https://openalex.org/W2409174449","https://openalex.org/W2787894218","https://openalex.org/W2913668833","https://openalex.org/W3085162807","https://openalex.org/W4253186498","https://openalex.org/W4388317518"],"related_works":["https://openalex.org/W3093828343","https://openalex.org/W2001132607","https://openalex.org/W2590699657","https://openalex.org/W2385309627","https://openalex.org/W2777477135","https://openalex.org/W4231122928","https://openalex.org/W3204465708","https://openalex.org/W12552165","https://openalex.org/W2274993886","https://openalex.org/W2365172519"],"abstract_inverted_index":{"Although":[0],"the":[1,13,23,58,84,95,103,115,161,166],"Papanicolaou":[2],"smear":[3],"has":[4],"been":[5],"successful":[6],"in":[7,12,22],"decreasing":[8],"cervical":[9],"cancer":[10],"incidence":[11],"developed":[14],"world,":[15],"there":[16],"exist":[17],"many":[18],"challenges":[19,56],"for":[20,72,94],"implementation":[21],"developing":[24],"world.":[25],"Quantitative":[26],"cytology,":[27],"a":[28,37,53,65,89,123,145,148,172,177],"semi-automated":[29],"method":[30],"that":[31,92,170],"quantifies":[32],"cellular":[33,104,162],"image":[34],"features,":[35],"is":[36],"promising":[38],"screening":[39],"test":[40],"candidate.":[41],"The":[42,152],"nested":[43],"structure":[44],"of":[45,49,68,125,131,168],"its":[46],"data":[47,77,97],"(measurements":[48],"multiple":[50],"cells":[51,133,169],"within":[52],"patient)":[54],"provides":[55],"to":[57,112,122,158,196],"usual":[59],"classification":[60],"problem.":[61],"Here":[62],"we":[63,155],"perform":[64],"comparative":[66],"study":[67],"three":[69],"main":[70],"approaches":[71],"problems":[73],"with":[74,128,180],"this":[75],"general":[76],"structure:":[78],"a)":[79],"extract":[80],"patient-level":[81],"features":[82,139],"from":[83],"cell-level":[85],"data;":[86],"b)":[87],"use":[88,107],"statistical":[90,191],"model":[91],"accounts":[93],"hierarchical":[96],"structure;":[98],"and":[99,106,137,164,184],"c)":[100],"classify":[101,113,159],"at":[102,114,160],"level":[105,163],"an":[108,129],"ad":[109],"hoc":[110],"approach":[111,154],"patient":[116,136,146],"level.":[117],"We":[118],"apply":[119],"these":[120],"methods":[121],"dataset":[124],"1,728":[126],"patients,":[127],"average":[130],"2,600":[132],"collected":[134],"per":[135,141],"133":[138],"measured":[140],"cell,":[142],"predicting":[143],"whether":[144],"had":[147,171],"positive":[149],"biopsy":[150],"result.":[151],"best":[153],"found":[156],"was":[157],"count":[165],"number":[167],"posterior":[173],"probability":[174],"greater":[175],"than":[176],"threshold":[178],"value,":[179],"estimated":[181],"61%":[182],"sensitivity":[183],"89%":[185],"specificity":[186],"on":[187],"independent":[188],"data.":[189],"Recent":[190],"learning":[192],"developments":[193],"allowed":[194],"us":[195],"achieve":[197],"high":[198],"accuracy.":[199]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
