{"id":"https://openalex.org/W2503655816","doi":"https://doi.org/10.1002/pra2.2015.145052010020","title":"CharaParser+EQ: Performance evaluation without gold standard","display_name":"CharaParser+EQ: Performance evaluation without gold standard","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2503655816","doi":"https://doi.org/10.1002/pra2.2015.145052010020","mag":"2503655816"},"language":"en","primary_location":{"id":"doi:10.1002/pra2.2015.145052010020","is_oa":true,"landing_page_url":"https://doi.org/10.1002/pra2.2015.145052010020","pdf_url":"https://asistdl.onlinelibrary.wiley.com/doi/pdfdirect/10.1002/pra2.2015.145052010020","source":{"id":"https://openalex.org/S4393918545","display_name":"Proceedings of the Association for Information Science and Technology","issn_l":"2373-9231","issn":["2373-9231"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Association for Information Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://asistdl.onlinelibrary.wiley.com/doi/pdfdirect/10.1002/pra2.2015.145052010020","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044387303","display_name":"Hong Cui","orcid":"https://orcid.org/0000-0001-6218-283X"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hong Cui","raw_affiliation_strings":["School of Information Resources and Library Science University of Arizona  Tucson AZ 85719","School of Information Resources and Library Science, University of Arizona, Tucson, AZ 85719"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Resources and Library Science University of Arizona  Tucson AZ 85719","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"School of Information Resources and Library Science, University of Arizona, Tucson, AZ 85719","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037935786","display_name":"Wasila Dahdul","orcid":"https://orcid.org/0000-0003-3162-7490"},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Wasila Dahdul","raw_affiliation_strings":["Department of Biology University of South Dakota  Vermillion SD 57069","Department of Biology, University of South Dakota, Vermillion, SD 57069"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology University of South Dakota  Vermillion SD 57069","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"Department of Biology, University of South Dakota, Vermillion, SD 57069","institution_ids":["https://openalex.org/I189957204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064185042","display_name":"Alexander T. Dececchi","orcid":null},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexander T. Dececchi","raw_affiliation_strings":["Department of Biology University of South Dakota  Vermillion SD 57069","Department of Biology, University of South Dakota, Vermillion, SD 57069"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology University of South Dakota  Vermillion SD 57069","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"Department of Biology, University of South Dakota, Vermillion, SD 57069","institution_ids":["https://openalex.org/I189957204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033039122","display_name":"Nizar Ibrahim","orcid":"https://orcid.org/0000-0001-5839-6798"},"institutions":[{"id":"https://openalex.org/I4210166947","display_name":"Organogenesis (United States)","ror":"https://ror.org/05htw5381","country_code":"US","type":"company","lineage":["https://openalex.org/I4210166947"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nizar Ibrahim","raw_affiliation_strings":["Department of Organismal Biology and Anatomy  Chicago IL 60637","Department of Organismal Biology and Anatomy, Chicago, IL, 60637"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Organismal Biology and Anatomy  Chicago IL 60637","institution_ids":["https://openalex.org/I4210166947"]},{"raw_affiliation_string":"Department of Organismal Biology and Anatomy, Chicago, IL, 60637","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020099887","display_name":"Paula Mabee","orcid":"https://orcid.org/0000-0002-8455-3213"},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Paula Mabee","raw_affiliation_strings":["Department of Biology University of South Dakota  Vermillion SD 57069","Department of Biology, University of South Dakota, Vermillion, SD 57069"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology University of South Dakota  Vermillion SD 57069","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"Department of Biology, University of South Dakota, Vermillion, SD 57069","institution_ids":["https://openalex.org/I189957204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021056529","display_name":"James P. Balhoff","orcid":"https://orcid.org/0000-0002-8688-6599"},"institutions":[{"id":"https://openalex.org/I6002401","display_name":"National Evolutionary Synthesis Center","ror":"https://ror.org/001ykb961","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I6002401"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James P. Balhoff","raw_affiliation_strings":["National Evolutionary Synthesis Center  Durham NC 27705","National Evolutionary Synthesis Center, Durham, NC 27705"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Evolutionary Synthesis Center  Durham NC 27705","institution_ids":["https://openalex.org/I6002401"]},{"raw_affiliation_string":"National Evolutionary Synthesis Center, Durham, NC 27705","institution_ids":["https://openalex.org/I6002401"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027930310","display_name":"Hariharan Gopalakrishnan","orcid":null},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hariharan Gopalakrishnan","raw_affiliation_strings":["School of Information Resources and Library Science University of Arizona  Tucson AZ 85719","School of Information Resources and Library Science, University of Arizona, Tucson, AZ 85719"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Resources and Library Science University of Arizona  Tucson AZ 85719","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"School of Information Resources and Library Science, University of Arizona, Tucson, AZ 85719","institution_ids":["https://openalex.org/I138006243"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5020099887","https://openalex.org/A5021056529","https://openalex.org/A5027930310","https://openalex.org/A5033039122","https://openalex.org/A5037935786","https://openalex.org/A5044387303","https://openalex.org/A5064185042"],"corresponding_institution_ids":["https://openalex.org/I138006243","https://openalex.org/I189957204","https://openalex.org/I4210166947","https://openalex.org/I6002401"],"apc_list":null,"apc_paid":null,"fwci":1.8069,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.85574445,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"52","issue":"1","first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.747509777545929},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.7111369371414185},{"id":"https://openalex.org/keywords/completeness","display_name":"Completeness (order theory)","score":0.6478680372238159},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6033764481544495},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.5650599002838135},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.5197750926017761},{"id":"https://openalex.org/keywords/character","display_name":"Character (mathematics)","score":0.4953862428665161},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.47009989619255066},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4197949767112732},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3828737437725067},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.340110719203949},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32463109493255615},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1326429545879364},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.07642349600791931},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06168937683105469}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.747509777545929},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.7111369371414185},{"id":"https://openalex.org/C17231256","wikidata":"https://www.wikidata.org/wiki/Q5156540","display_name":"Completeness (order theory)","level":2,"score":0.6478680372238159},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6033764481544495},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.5650599002838135},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.5197750926017761},{"id":"https://openalex.org/C2780861071","wikidata":"https://www.wikidata.org/wiki/Q1062934","display_name":"Character (mathematics)","level":2,"score":0.4953862428665161},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.47009989619255066},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4197949767112732},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3828737437725067},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.340110719203949},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32463109493255615},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1326429545879364},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.07642349600791931},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06168937683105469},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/pra2.2015.145052010020","is_oa":true,"landing_page_url":"https://doi.org/10.1002/pra2.2015.145052010020","pdf_url":"https://asistdl.onlinelibrary.wiley.com/doi/pdfdirect/10.1002/pra2.2015.145052010020","source":{"id":"https://openalex.org/S4393918545","display_name":"Proceedings of the Association for Information Science and Technology","issn_l":"2373-9231","issn":["2373-9231"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Association for Information Science and Technology","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1002/pra2.2015.145052010020","is_oa":true,"landing_page_url":"https://doi.org/10.1002/pra2.2015.145052010020","pdf_url":"https://asistdl.onlinelibrary.wiley.com/doi/pdfdirect/10.1002/pra2.2015.145052010020","source":{"id":"https://openalex.org/S4393918545","display_name":"Proceedings of the Association for Information Science and Technology","issn_l":"2373-9231","issn":["2373-9231"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Association for Information Science and Technology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G247860501","display_name":null,"funder_award_id":"0849982","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2891145013","display_name":"BCSP:  Collaborative Research:   ABI Development: Exploring Taxon Concepts (ETC) through analyzing fine-grained semantic markup of descriptive literature","funder_award_id":"1147266","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3070783403","display_name":null,"funder_award_id":"EF-0849982","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4105349646","display_name":null,"funder_award_id":"DBI-1062542","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5768129421","display_name":null,"funder_award_id":"1062542","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2503655816.pdf","grobid_xml":"https://content.openalex.org/works/W2503655816.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W19601399","https://openalex.org/W1541298030","https://openalex.org/W1550258693","https://openalex.org/W2000587863","https://openalex.org/W2007859640","https://openalex.org/W2024729819","https://openalex.org/W2026656222","https://openalex.org/W2031833126","https://openalex.org/W2040298842","https://openalex.org/W2040610660","https://openalex.org/W2059224185","https://openalex.org/W2075182631","https://openalex.org/W2082950241","https://openalex.org/W2091978351","https://openalex.org/W2091980371","https://openalex.org/W2097606805","https://openalex.org/W2100751507","https://openalex.org/W2101727078","https://openalex.org/W2111519552","https://openalex.org/W2116034137","https://openalex.org/W2122402213","https://openalex.org/W2123301721","https://openalex.org/W2126276057","https://openalex.org/W2131084949","https://openalex.org/W2133512280","https://openalex.org/W2137362149","https://openalex.org/W2147834895","https://openalex.org/W2159348493","https://openalex.org/W2166240318","https://openalex.org/W2168384920","https://openalex.org/W4231244517"],"related_works":["https://openalex.org/W1503216044","https://openalex.org/W2393609567","https://openalex.org/W2369369044","https://openalex.org/W2354143083","https://openalex.org/W2372906645","https://openalex.org/W4237277701","https://openalex.org/W4319998713","https://openalex.org/W2358294942","https://openalex.org/W4367460280","https://openalex.org/W4328049145"],"abstract_inverted_index":{"ABSTRACT":[0],"To":[1],"make":[2],"phenotypic":[3],"characters":[4],"of":[5,71,116],"organisms":[6],"widely":[7],"useful":[8],"for":[9,22],"computerized":[10],"biology":[11],"research,":[12],"biocurators":[13,90],"manually":[14],"convert":[15],"character":[16,60],"descriptions":[17],"to":[18,48,87,109,143],"a":[19,44,64,110],"structured":[20],"format,":[21],"example":[23],"the":[24,51,69,72,79,96,114,117,121,128,135],"Entity\u2010Quality":[25],"(EQ)":[26],"format.":[27],"The":[28],"manual":[29],"approach":[30],"is":[31,81,105,169],"time":[32],"consuming":[33],"and":[34,103,133,139,165],"affected":[35],"by":[36,149],"inter\u2010curator":[37,156],"variations.":[38],"In":[39],"this":[40,92],"paper":[41],"we":[42],"report":[43,63],"software":[45,53,73,80],"application,":[46],"CharaParser+EQ,":[47],"our":[49],"knowledge":[50,145],"first":[52],"that":[54,67,162],"produces":[55],"EQ":[56,130],"statements":[57],"from":[58,84],"textual":[59],"descriptions.":[61],"We":[62],"recent":[65],"experiment":[66],"evaluates":[68],"performance":[70,101,132],"against":[74],"three":[75],"experienced":[76],"biocurators.":[77],"While":[78],"still":[82],"far":[83],"being":[85],"able":[86],"compete":[88],"with":[89],"on":[91,127,134,155],"highly":[93],"intellectual":[94],"task,":[95],"results":[97],"show":[98],"(1)":[99],"CharaParser+EQ's":[100],"(precision":[102],"recall)":[104],"greatly":[106],"improved":[107],"compared":[108],"previous":[111],"version,":[112],"(2)":[113],"completeness":[115],"ontologies":[118],"used":[119],"in":[120],"process":[122],"has":[123,151],"significant":[124,153],"impact":[125,154],"both":[126],"software's":[129],"generation":[131],"agreement":[136],"among":[137],"curators,":[138],"(3)":[140],"unlimited":[141],"access":[142],"external":[144],"(published":[146],"papers,":[147],"books)":[148],"curators":[150],"no":[152],"agreements.":[157],"A":[158],"detailed":[159],"error":[160],"analysis":[161],"compares":[163],"machine":[164],"curator":[166],"generated":[167],"EQs":[168],"included.":[170]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":9},{"year":2016,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
