{"id":"https://openalex.org/W2103183635","doi":"https://doi.org/10.1002/meet.2009.14504603115","title":"The emergence of information organization in biology","display_name":"The emergence of information organization in biology","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2103183635","doi":"https://doi.org/10.1002/meet.2009.14504603115","mag":"2103183635"},"language":"en","primary_location":{"id":"doi:10.1002/meet.2009.14504603115","is_oa":true,"landing_page_url":"https://doi.org/10.1002/meet.2009.14504603115","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/meet.2009.14504603115","source":{"id":"https://openalex.org/S4306523999","display_name":"Proceedings of the American Society for Information Science and Technology","issn_l":"1550-8390","issn":["1550-8390","1936-1734"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the American Society for Information Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/meet.2009.14504603115","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062603258","display_name":"D. Wright","orcid":"https://orcid.org/0000-0003-1018-5187"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dan Wright","raw_affiliation_strings":["University of Illinois at Urbana-Champaign, 501 E. Daniel Street, MC-493, Champaign, IL 61820, USA"],"affiliations":[{"raw_affiliation_string":"University of Illinois at Urbana-Champaign, 501 E. Daniel Street, MC-493, Champaign, IL 61820, USA","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5062603258"],"corresponding_institution_ids":["https://openalex.org/I157725225"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.14297884,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"46","issue":"1","first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9441999793052673,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9441999793052673,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.942799985408783,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9386000037193298,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/information-system","display_name":"Information system","score":0.5573295950889587},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.515321671962738},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4639098048210144},{"id":"https://openalex.org/keywords/living-systems","display_name":"Living systems","score":0.45793795585632324},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3582298457622528},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2504468560218811},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13747748732566833}],"concepts":[{"id":"https://openalex.org/C180198813","wikidata":"https://www.wikidata.org/wiki/Q121182","display_name":"Information system","level":2,"score":0.5573295950889587},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.515321671962738},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4639098048210144},{"id":"https://openalex.org/C2776184637","wikidata":"https://www.wikidata.org/wiki/Q6506039","display_name":"Living systems","level":2,"score":0.45793795585632324},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3582298457622528},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2504468560218811},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13747748732566833},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/meet.2009.14504603115","is_oa":true,"landing_page_url":"https://doi.org/10.1002/meet.2009.14504603115","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/meet.2009.14504603115","source":{"id":"https://openalex.org/S4306523999","display_name":"Proceedings of the American Society for Information Science and Technology","issn_l":"1550-8390","issn":["1550-8390","1936-1734"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the American Society for Information Science and Technology","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1002/meet.2009.14504603115","is_oa":true,"landing_page_url":"https://doi.org/10.1002/meet.2009.14504603115","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/meet.2009.14504603115","source":{"id":"https://openalex.org/S4306523999","display_name":"Proceedings of the American Society for Information Science and Technology","issn_l":"1550-8390","issn":["1550-8390","1936-1734"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the American Society for Information Science and Technology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103183635.pdf","grobid_xml":"https://content.openalex.org/works/W2103183635.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1491913384","https://openalex.org/W2023495915","https://openalex.org/W2055294127","https://openalex.org/W2058598267","https://openalex.org/W2101999834","https://openalex.org/W2161762698","https://openalex.org/W4388299828"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2910724570","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2028577582"],"abstract_inverted_index":{"Systems":[0],"of":[1,27,50,58,81,95,106,110,120,137,206,268,271,278,293,306,314,323,336,340,360,366,377,405,426,431,443,448,457,463,466,492,515,524,537,566,573,581,601,611,614,621,628,662,666,701,752,768,816,836,878,890,895,905,935,937,965,983,986,997],"information":[2,51,59,112,121,138,172,198,213,276,295,316,325,583,623,817,866,880,891,897,940,988,1000],"organization":[3,52,122,136,151,173,185,199,214,236,247,296,305,353,456,538,647,898],"are":[4,15,192,201,384,415,434,494,545,550,560,808,943,971],"commonly":[5],"understood":[6],"to":[7,38,70,92,154,157,186,239,251,309,386,594,652,654,676,685,693,727,734,780,791,820,842,869,922,946,1014],"be":[8,155,387,441,650,677,714,918],"human":[9,12,96,208,435,471,638,896],"designed":[10,97],"and":[11,14,64,78,87,124,145,160,196,254,265,282,319,343,347,363,368,389,409,418,437,454,473,486,489,497,526,528,532,539,543,553,559,584,597,604,645,695,710,718,736,742,754,759,782,822,840,854,859,920,980,1021,1028],"implemented,":[13],"often":[16],"synonymous":[17],"with":[18,512,910,976],"classification":[19,31],"systems.":[20,73,113],"This":[21,721],"is":[22,46,139,215,354,460,480,519,578,608,674,725,744,789,833,926,953,1002],"true":[23],"across":[24,401],"all":[25,82,204,245,626,667],"sorts":[26],"technologies,":[28],"from":[29,234,262,266,587,631,932],"library":[30],"systems":[32,40,53,57,84,98,200,241,302,322,536,575,624,635,648,670,691,712,732,899,941,1001],"like":[33,41,303,469],"the":[34,61,65,75,107,117,130,135,207,298,304,307,310,330,334,351,364,394,427,455,461,470,487,522,530,556,561,567,602,609,612,615,619,632,660,664,699,750,775,876,886,911,938,984,993],"Decimal":[35],"Classication":[36],"(DC),":[37],"new":[39],"user-driven":[42],"tagging.":[43],"However,":[44],"there":[45],"a":[47,101,141,180,257,375,402,420,445,481,579,745,765,796,803,834,846,903,960,977],"broader":[48],"view":[49],"that":[54,132,149,275,413,642,706,723,729,788,811,900,915,929,942],"encompasses":[55],"biological":[56,181,294,315,432,467,516,568,939,998],"(like":[60],"genetic":[62,616],"code":[63],"immune":[66],"system)":[67],"in":[68,148,163,175,203,230,237,242,249,333,356,510,576,845,867,907,989,1007],"addition":[69],"these":[71,83,951],"human-engineered":[72],"Understanding":[74,871],"evolutionary":[76,263,423,505,569,861,873],"principles":[77,741,936,952],"possible":[79,872],"trajectories":[80],"\u2013":[85,89,219,287,317,630,800,913,925],"artificial":[86,535,702],"natural":[88],"will":[90,881,930],"contribute":[91],"our":[93,534],"understanding":[94,934],"by":[99,393,555,689,856],"presenting":[100],"much":[102,509,1025],"more":[103,391],"general":[104],"picture":[105,964],"essential":[108,1004],"features":[109,996],"functional":[111,188,378,848],"We":[114,640,970],"have":[115,326,398,704,763,958],"observed":[116],"following":[118],"properties":[119,372],"systems,":[123],"take":[125],"them":[126],"as":[127,256,329,444,774,829,955],"assumptions":[128],"grounding":[129],"discussion":[131,1027],"follows.":[133],"First,":[134],"inherently":[140],"balance":[142],"between":[143],"dynamic":[144,280],"stable":[146],"properties,":[147],"an":[150,216,824,927,933,1003],"system":[152,447],"needs":[153],"able":[156,385,651,692,733,779,790,945],"accommodate":[158],"innovation":[159],"reflect":[161],"change":[162],"its":[164,502],"environment,":[165],"while":[166,507],"still":[167],"having":[168,508,595],"enduring":[169],"utility.":[170],"Second,":[171],"appears":[174],"many":[176,228,231],"different":[177],"contexts:":[178],"at":[179,671],"level,":[182],"organisms":[183,338,644],"use":[184,737],"adaptive,":[187],"advantage;":[189],"formal":[190],"classifications":[191],"used":[193,450],"throughout":[194,657],"LIS;":[195],"informal":[197],"found":[202],"aspects":[205,465,491,514],"environment":[209],"around":[210],"us.":[211],"Third,":[212],"emergent":[217,582,622],"phenomena":[218],"it":[220,724,832],"hasn't":[221],"\u201calways":[222],"been":[223,327],"there\u201d,":[224],"but":[225,618],"has":[226],"emerged":[227],"times":[229],"contexts,":[232],"ranging":[233],"evolved":[235,715],"biology":[238,558,577,629],"engineered":[240],"LIS.":[243],"In":[244,350],"cases,":[246],"emerges":[248,255],"response":[250],"some":[252],"need,":[253],"collective":[258],"phenomena.":[259],"Finally,":[260],"evidence":[261],"genetics":[264],"investigations":[267],"abstract":[269,963,995],"models":[270],"language":[272,318,436,478,493,542],"strongly":[273],"suggests":[274,722],"organizations":[277,397],"high":[279],"complexity":[281,433],"robustness":[283],"can":[284,713,818,901,917],"evolve":[285,735,819],"naturally":[286],"without":[288],"planning":[289],"or":[290],"intent.":[291],"Examples":[292],"include":[297],"most":[299,311,428,562,605],"fundamental":[300,797,887],"cellular":[301],"genome,":[308,352],"complex":[312,344,474,563,708],"products":[313,430,565],"culture.":[320,438],"These":[321,371],"organized":[324],"implicated":[328],"crucial":[331],"developments":[332],"evolution":[335,572,613,700,828],"higher":[337],"capable":[339],"coordinated":[341],"action":[342],"communications":[345],"(Szathmary":[346],"Maynard-Smith,":[348],"1995).":[349],"exhibited":[355],"gene":[357],"ordering,":[358],"clustering":[359],"related":[361],"genes,":[362],"structure":[365],"coding":[367],"non-coding":[369],"material.":[370],"exist":[373],"for":[374,380,452,521,851,875,1024],"variety":[376],"reasons;":[379],"example,":[381],"co-located":[382],"genes":[383],"processed":[388],"expressed":[390],"rapidly":[392],"cell.":[395],"Genome":[396],"great":[399],"consistencies":[400],"wide":[403],"range":[404,620],"organismal":[406],"classes":[407],"(Koonin":[408],"Wolf,":[410],"2008),":[411],"indicating":[412],"they":[414,549,916,967],"functionally":[416],"important,":[417],"were":[419],"relatively":[421,707],"early":[422],"development.":[424],"Two":[425],"significant":[429],"Language":[439,518],"may":[440],"thought":[442],"structured":[446],"information,":[449],"both":[451,643],"communication":[453],"information.":[458,784],"It":[459,500],"product":[462],"certain":[464],"evolution,":[468],"brain":[472],"vocal":[475],"apparatus.":[476],"Additionally,":[477],"itself":[479,794],"constantly":[482,498],"evolving":[483],"communal":[484],"phenomena,":[485],"communicative":[488,598],"organizational":[490,740],"mutually":[495],"reinforcing":[496],"evolving.":[499],"exhibits":[501],"own":[503,739],"characteristic":[504],"dynamics,":[506],"common":[511],"other":[513],"organization.":[517,892],"necessary":[520],"existence":[523],"culture":[525,544],"society,":[527],"enables":[529],"development":[531,877],"specification":[533],"classification.":[540],"While":[541],"not":[546],"necessarily":[547],"\u201cbiological\u201d,":[548],"clearly":[551],"shaped":[552],"constrained":[554],"underlying":[557],"informational":[564,574,798],"trajectory.":[570],"The":[571,893],"problem":[580,661,688],"semantics:":[585],"starting":[586],"non-biological":[588],"chemistry,":[589],"how":[590],"did":[591],"we":[592,683,762,807,830,956],"get":[593],"representational":[596,709],"information?":[599],"One":[600],"earliest":[603,776],"obvious":[606],"examples":[607],"question":[610],"code,":[617],"spans":[625],"areas":[627],"smallest":[633],"molecular":[634],"through":[636],"modern":[637],"language.":[639],"know":[641],"human-developed":[646],"must":[649],"adapt":[653,921],"changing":[655,923],"demands":[656],"their":[658,672,738,908],"life-cycles;":[659],"engineering":[663],"accommodation":[665],"contingencies":[668],"into":[669,698,885,950],"inception":[673],"known":[675],"intractable":[678],"(Olson,":[679],"1998),":[680],"so":[681,914],"instead":[682],"want":[684],"address":[686],"this":[687,812,860,973,1009],"creating":[690],"learn":[694],"adapt.":[696],"Investigations":[697],"languages":[703],"demonstrated":[705],"semantic":[711],"autonomously":[716],"(Swarup":[717],"Gasser,":[719,1016],"2008).":[720],"reasonable":[726],"think":[728],"building":[730,888],"software":[731],"content":[743],"practical":[746],"goal.":[747],"Building":[748],"on":[749],"work":[751],"Eigen":[753],"Schuster":[755],"(1982),":[756],"Szathmary":[757],"(1999),":[758],"Kauffman":[760],"(2000),":[761],"developed":[764],"theoretical":[766,978],"model":[767,982],"spatially":[769],"localized,":[770],"interacting":[771],"chemical":[772,786],"cycles":[773],"entities":[777],"(agents)":[778],"encode":[781,823],"reproduce":[783,793],"A":[785],"cycle":[787],"accurately":[792],"embodies":[795],"process":[799,835,862],"copying.":[801],"Using":[802],"multi-agent":[804],"simulation":[805],"framework,":[806],"investigating":[809],"ways":[810],"very":[813,961],"primitive":[814,990],"form":[815],"represent":[821],"agent's":[825],"environment.":[826],"Biological":[827],"understand":[831],"encoding":[837],"environmental":[838],"states":[839,844],"adaptations":[841],"those":[843],"stable,":[847],"storage":[849],"media":[850],"later":[852],"retrieval":[853],"deployment":[855],"living":[857],"agents,":[858],"requires":[863],"reliably":[864],"inheritable":[865],"order":[868],"function.":[870],"scenarios":[874],"inherited":[879],"give":[882],"us":[883],"insight":[884],"blocks":[889],"creation":[894],"exercise":[902],"degree":[904],"autonomy":[906],"interaction":[909],"world":[912],"flexible":[919],"conditions":[924],"enterprise":[928],"benefit":[931],"already":[944],"do":[947],"this.":[948],"Research":[949],"required,":[954],"currently":[957],"only":[959],"high-level,":[962],"what":[966],"might":[968],"be.":[969],"attacking":[972],"problem,":[974],"beginning":[975],"account":[979],"computer":[981],"emergence":[985],"hereditary":[987],"biology.":[991],"Elaborating":[992],"essential,":[994],"self-organizing":[999],"first":[1005],"step":[1006],"developing":[1008],"understanding.":[1010],"I":[1011],"am":[1012],"grateful":[1013],"Les":[1015],"Carl":[1017],"Woese,":[1018],"Allen":[1019],"Renear,":[1020],"Karen":[1022],"Wickett":[1023],"helpful":[1026],"criticism.":[1029]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
