{"id":"https://openalex.org/W2079442270","doi":"https://doi.org/10.1002/meet.14504901246","title":"OTO: Ontology term organizer","display_name":"OTO: Ontology term organizer","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2079442270","doi":"https://doi.org/10.1002/meet.14504901246","mag":"2079442270"},"language":"en","primary_location":{"id":"doi:10.1002/meet.14504901246","is_oa":false,"landing_page_url":"https://doi.org/10.1002/meet.14504901246","pdf_url":null,"source":{"id":"https://openalex.org/S4306523999","display_name":"Proceedings of the American Society for Information Science and Technology","issn_l":"1550-8390","issn":["1550-8390","1936-1734"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the American Society for Information Science and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068762317","display_name":"Fengqiong Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Fengqiong Huang","raw_affiliation_strings":["University of Arizona, USA","University of Arizona, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Arizona, USA","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"University of Arizona, USA#TAB#","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029605705","display_name":"James Macklin","orcid":"https://orcid.org/0000-0001-9508-1349"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"James Macklin","raw_affiliation_strings":["Agriculture and Agri-Food, Canada, Canada","Agriculture and Agri-Food Canada Canada"],"affiliations":[{"raw_affiliation_string":"Agriculture and Agri-Food, Canada, Canada","institution_ids":["https://openalex.org/I1331897569"]},{"raw_affiliation_string":"Agriculture and Agri-Food Canada Canada","institution_ids":["https://openalex.org/I1331897569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102803407","display_name":"Paul J. Morris","orcid":"https://orcid.org/0000-0002-3673-444X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Paul J. Morris","raw_affiliation_strings":["Harvard University Herbaria, USA"],"affiliations":[{"raw_affiliation_string":"Harvard University Herbaria, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082868985","display_name":"Partha Pratim Sanyal","orcid":null},"institutions":[{"id":"https://openalex.org/I163361683","display_name":"Cognizant (United States)","ror":"https://ror.org/036s7bw54","country_code":"US","type":"company","lineage":["https://openalex.org/I163361683"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Partha Pratim Sanyal","raw_affiliation_strings":["Cognizant Technology Solutions, USA"],"affiliations":[{"raw_affiliation_string":"Cognizant Technology Solutions, USA","institution_ids":["https://openalex.org/I163361683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079041086","display_name":"Robert E. Morris","orcid":"https://orcid.org/0000-0003-4762-4817"},"institutions":[{"id":"https://openalex.org/I33434090","display_name":"University of Massachusetts Boston","ror":"https://ror.org/04ydmy275","country_code":"US","type":"education","lineage":["https://openalex.org/I33434090"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Robert A. Morris","raw_affiliation_strings":["University of Massachusetts Boston, USA","University of Massachusetts., Boston, USA"],"affiliations":[{"raw_affiliation_string":"University of Massachusetts Boston, USA","institution_ids":["https://openalex.org/I33434090"]},{"raw_affiliation_string":"University of Massachusetts., Boston, USA","institution_ids":["https://openalex.org/I33434090"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044387303","display_name":"Hong Cui","orcid":"https://orcid.org/0000-0001-6218-283X"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hong Cui","raw_affiliation_strings":["University of Arizona, USA","University of Arizona, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"University of Arizona, USA","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"University of Arizona, USA#TAB#","institution_ids":["https://openalex.org/I138006243"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5029605705","https://openalex.org/A5044387303","https://openalex.org/A5068762317","https://openalex.org/A5079041086","https://openalex.org/A5082868985","https://openalex.org/A5102803407"],"corresponding_institution_ids":["https://openalex.org/I1331897569","https://openalex.org/I136199984","https://openalex.org/I138006243","https://openalex.org/I163361683","https://openalex.org/I33434090"],"apc_list":null,"apc_paid":null,"fwci":0.1313,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.51835891,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"49","issue":"1","first_page":"1","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9749000072479248,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7032272815704346},{"id":"https://openalex.org/keywords/login","display_name":"Login","score":0.6750056147575378},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.5861849188804626},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5747367143630981},{"id":"https://openalex.org/keywords/sort","display_name":"sort","score":0.5183514356613159},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5080044865608215},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.46393683552742004},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4480833411216736},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4328831136226654},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.1305159628391266},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12691673636436462},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.07445889711380005},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.06568941473960876},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.057807862758636475}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7032272815704346},{"id":"https://openalex.org/C113324615","wikidata":"https://www.wikidata.org/wiki/Q472302","display_name":"Login","level":2,"score":0.6750056147575378},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.5861849188804626},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5747367143630981},{"id":"https://openalex.org/C88548561","wikidata":"https://www.wikidata.org/wiki/Q347599","display_name":"sort","level":2,"score":0.5183514356613159},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5080044865608215},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.46393683552742004},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4480833411216736},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4328831136226654},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.1305159628391266},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12691673636436462},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.07445889711380005},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.06568941473960876},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.057807862758636475},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/meet.14504901246","is_oa":false,"landing_page_url":"https://doi.org/10.1002/meet.14504901246","pdf_url":null,"source":{"id":"https://openalex.org/S4306523999","display_name":"Proceedings of the American Society for Information Science and Technology","issn_l":"1550-8390","issn":["1550-8390","1936-1734"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the American Society for Information Science and Technology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2797434816"],"related_works":["https://openalex.org/W4256170434","https://openalex.org/W4233948907","https://openalex.org/W4235220108","https://openalex.org/W4315650027","https://openalex.org/W4238894392","https://openalex.org/W2357607877","https://openalex.org/W4238771742","https://openalex.org/W4235839583","https://openalex.org/W4311722428","https://openalex.org/W4252054168"],"abstract_inverted_index":{"Abstract":[0],"We":[1],"believe":[2],"biology":[3,21,50],"ontologies":[4,19],"should":[5],"reflect":[6],"the":[7,16],"consensus":[8,13],"of":[9,18],"biologists.":[10,38],"To":[11],"promote":[12],"and":[14,34,41,79],"assist":[15],"development":[17],"in":[20,49,62],"domains,":[22],"we":[23],"implemented":[24],"a":[25],"web\u2010based":[26],"ontology":[27],"term":[28],"organizer":[29],"(OTO)":[30],"to":[31,57,82],"collect":[32],"grouping":[33],"relationship":[35],"opinions":[36],"from":[37],"Besides":[39],"is_a":[40],"part_of":[42],"relations":[43,48],"(the":[44],"most":[45],"frequently":[46],"used":[47,56],"domains),":[51],"OTO":[52],"can":[53],"also":[54],"be":[55],"sort":[58],"out":[59],"ordered":[60],"values":[61],"any":[63],"domain.":[64],"A":[65],"demo":[66],"dataset":[67],"OTO_demo":[68],"has":[69],"been":[70],"set":[71],"up":[72],"at":[73],"http://biosemantics.arizona.edu/ONTNEW":[74],".":[75],"Use":[76],"username":[77],"OTOdemo":[78],"password":[80],"OTOdemopass":[81],"login.":[83]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
