{"id":"https://openalex.org/W4406937462","doi":"https://doi.org/10.1002/jcc.70046","title":"<scp>PSSKB</scp>: A Web Application to Study Protein Structures","display_name":"<scp>PSSKB</scp>: A Web Application to Study Protein Structures","publication_year":2025,"publication_date":"2025-01-28","ids":{"openalex":"https://openalex.org/W4406937462","doi":"https://doi.org/10.1002/jcc.70046","pmid":"https://pubmed.ncbi.nlm.nih.gov/39876062"},"language":"en","primary_location":{"id":"doi:10.1002/jcc.70046","is_oa":true,"landing_page_url":"https://doi.org/10.1002/jcc.70046","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/jcc.70046","source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/jcc.70046","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092705372","display_name":"Denis V. Petrovskiy","orcid":"https://orcid.org/0000-0002-7281-7525"},"institutions":[{"id":"https://openalex.org/I4210152028","display_name":"Institute of Biomedical Chemistry","ror":"https://ror.org/040wrkp27","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110862","https://openalex.org/I4210152028"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Denis V. Petrovskiy","raw_affiliation_strings":["Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","institution_ids":["https://openalex.org/I4210152028"]},{"raw_affiliation_string":"Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia","institution_ids":["https://openalex.org/I4210152028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057671210","display_name":"Kirill S. Nikolsky","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152028","display_name":"Institute of Biomedical Chemistry","ror":"https://ror.org/040wrkp27","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110862","https://openalex.org/I4210152028"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Kirill S. Nikolsky","raw_affiliation_strings":["Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia"],"raw_orcid":"https://orcid.org/0000-0003-3571-513X","affiliations":[{"raw_affiliation_string":"Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","institution_ids":["https://openalex.org/I4210152028"]},{"raw_affiliation_string":"Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia","institution_ids":["https://openalex.org/I4210152028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102698558","display_name":"Liudmila I. Kulikova","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152028","display_name":"Institute of Biomedical Chemistry","ror":"https://ror.org/040wrkp27","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110862","https://openalex.org/I4210152028"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Liudmila I. Kulikova","raw_affiliation_strings":["Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","institution_ids":["https://openalex.org/I4210152028"]},{"raw_affiliation_string":"Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia","institution_ids":["https://openalex.org/I4210152028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038996145","display_name":"Vladimir R. Rudnev","orcid":"https://orcid.org/0000-0001-9618-346X"},"institutions":[{"id":"https://openalex.org/I4210152028","display_name":"Institute of Biomedical Chemistry","ror":"https://ror.org/040wrkp27","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110862","https://openalex.org/I4210152028"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Vladimir R. Rudnev","raw_affiliation_strings":["Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","institution_ids":["https://openalex.org/I4210152028"]},{"raw_affiliation_string":"Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia","institution_ids":["https://openalex.org/I4210152028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109740771","display_name":"Tatiana V. Butkova","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152028","display_name":"Institute of Biomedical Chemistry","ror":"https://ror.org/040wrkp27","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110862","https://openalex.org/I4210152028"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Tatiana V. Butkova","raw_affiliation_strings":["Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","institution_ids":["https://openalex.org/I4210152028"]},{"raw_affiliation_string":"Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia","institution_ids":["https://openalex.org/I4210152028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082623300","display_name":"Kristina A. Malsagova","orcid":"https://orcid.org/0000-0001-9404-1660"},"institutions":[{"id":"https://openalex.org/I4210152028","display_name":"Institute of Biomedical Chemistry","ror":"https://ror.org/040wrkp27","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110862","https://openalex.org/I4210152028"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Kristina A. Malsagova","raw_affiliation_strings":["Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","institution_ids":["https://openalex.org/I4210152028"]},{"raw_affiliation_string":"Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia","institution_ids":["https://openalex.org/I4210152028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014134703","display_name":"Valeriya I. Nakhod","orcid":"https://orcid.org/0000-0003-2322-4966"},"institutions":[{"id":"https://openalex.org/I4210152028","display_name":"Institute of Biomedical Chemistry","ror":"https://ror.org/040wrkp27","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110862","https://openalex.org/I4210152028"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Valeriya I. Nakhod","raw_affiliation_strings":["Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","institution_ids":["https://openalex.org/I4210152028"]},{"raw_affiliation_string":"Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia","institution_ids":["https://openalex.org/I4210152028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109740772","display_name":"Arthur T. Kopylov","orcid":null},"institutions":[{"id":"https://openalex.org/I4210152028","display_name":"Institute of Biomedical Chemistry","ror":"https://ror.org/040wrkp27","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110862","https://openalex.org/I4210152028"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Arthur T. Kopylov","raw_affiliation_strings":["Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","institution_ids":["https://openalex.org/I4210152028"]},{"raw_affiliation_string":"Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia","institution_ids":["https://openalex.org/I4210152028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003500932","display_name":"Anna L. Kaysheva","orcid":"https://orcid.org/0000-0003-4472-2016"},"institutions":[{"id":"https://openalex.org/I4210152028","display_name":"Institute of Biomedical Chemistry","ror":"https://ror.org/040wrkp27","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210110862","https://openalex.org/I4210152028"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Anna L. Kaysheva","raw_affiliation_strings":["Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia"],"raw_orcid":"https://orcid.org/0000-0003-4472-2016","affiliations":[{"raw_affiliation_string":"Laboratory of Structural Proteomics Institute of Biomedical Chemistry, Pogodinskaya  Moscow Russia","institution_ids":["https://openalex.org/I4210152028"]},{"raw_affiliation_string":"Laboratory of Structural Proteomics, Institute of Biomedical Chemistry, Pogodinskaya, Moscow, Russia","institution_ids":["https://openalex.org/I4210152028"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5003500932"],"corresponding_institution_ids":["https://openalex.org/I4210152028"],"apc_list":{"value":4840,"currency":"USD","value_usd":4840},"apc_paid":null,"fwci":0.3917,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.54004979,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"46","issue":"3","first_page":"e70046","last_page":"e70046"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8641961812973022},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.6841185092926025},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.5810465812683105},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5714132785797119},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.5620821118354797},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5483149886131287},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5106568932533264},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.470915287733078},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4656648635864258},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.43786177039146423},{"id":"https://openalex.org/keywords/modeller","display_name":"MODELLER","score":0.42859792709350586},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.4210788905620575},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.344778835773468},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3348120152950287},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23069104552268982},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.22475504875183105},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.20816835761070251},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.1716262400150299},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.16705110669136047},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.14680486917495728}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8641961812973022},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.6841185092926025},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.5810465812683105},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5714132785797119},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.5620821118354797},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5483149886131287},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5106568932533264},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.470915287733078},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4656648635864258},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.43786177039146423},{"id":"https://openalex.org/C193153401","wikidata":"https://www.wikidata.org/wiki/Q3859815","display_name":"MODELLER","level":4,"score":0.42859792709350586},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.4210788905620575},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.344778835773468},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3348120152950287},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23069104552268982},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.22475504875183105},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.20816835761070251},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.1716262400150299},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.16705110669136047},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.14680486917495728},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1002/jcc.70046","is_oa":true,"landing_page_url":"https://doi.org/10.1002/jcc.70046","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/jcc.70046","source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},{"id":"pmid:39876062","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39876062","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational chemistry","raw_type":null}],"best_oa_location":{"id":"doi:10.1002/jcc.70046","is_oa":true,"landing_page_url":"https://doi.org/10.1002/jcc.70046","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/jcc.70046","source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320327494","display_name":"Ministry of Science and Higher Education of the Russian Federation","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4406937462.pdf","grobid_xml":"https://content.openalex.org/works/W4406937462.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1578379794","https://openalex.org/W1985445940","https://openalex.org/W1995808589","https://openalex.org/W2073577982","https://openalex.org/W2139915497","https://openalex.org/W2154139219","https://openalex.org/W2171681733","https://openalex.org/W2428593791","https://openalex.org/W2765601065","https://openalex.org/W2769644447","https://openalex.org/W2792393524","https://openalex.org/W2915105770","https://openalex.org/W3009091796","https://openalex.org/W3152110994","https://openalex.org/W3173554672","https://openalex.org/W3177828909","https://openalex.org/W3217306685","https://openalex.org/W4224224630","https://openalex.org/W4293475204","https://openalex.org/W4294628667","https://openalex.org/W4295165394","https://openalex.org/W4296961473","https://openalex.org/W4309506674","https://openalex.org/W4309908854","https://openalex.org/W4310645193","https://openalex.org/W4311004300","https://openalex.org/W4312139932","https://openalex.org/W4315567820","https://openalex.org/W4315865958","https://openalex.org/W4367676419","https://openalex.org/W4386285297","https://openalex.org/W4386856594","https://openalex.org/W4386967473","https://openalex.org/W4388703929","https://openalex.org/W4388976812","https://openalex.org/W4398239720","https://openalex.org/W6649065937","https://openalex.org/W6685196464","https://openalex.org/W6746086362"],"related_works":["https://openalex.org/W4230842383","https://openalex.org/W2131736388","https://openalex.org/W2093730890","https://openalex.org/W2888555533","https://openalex.org/W2969133412","https://openalex.org/W4383473004","https://openalex.org/W1595347157","https://openalex.org/W2103435205","https://openalex.org/W2316191393","https://openalex.org/W2084743099"],"abstract_inverted_index":{"The":[0,109,132,212,230],"proteins":[1,36,44],"expressed":[2],"during":[3],"the":[4,30,40,73,77,98,116,120,141,150,153,156,166,188,197,205,223,246,259],"cell":[5,8],"cycle":[6],"determine":[7,204],"function":[9,33,61,74],"and":[10,25,32,50,62,68,75,79,103,158,203,225,235,266,274],"ensure":[11],"signaling":[12],"pathway":[13],"activation":[14],"in":[15,21,43,84,107,152],"response":[16],"to":[17,46,115,175,186,199,222,244],"environmental":[18],"influences.":[19],"Developments":[20],"structural":[22,41,219],"biology,":[23],"biophysics,":[24],"bioinformatics":[26],"provide":[27],"information":[28],"on":[29,39,180,258,263],"structure":[31,210],"of":[34,81,140,149,155,179,208,218],"particular":[35],"including":[37],"that":[38,70,91],"changes":[42,151],"due":[45],"post-translational":[47],"modification":[48],"(PTM)":[49],"amino":[51],"acid":[52],"substitutions":[53],"(AAS),":[54],"which":[55,169],"is":[56,88,232,242,288],"essential":[57],"for":[58,96,191,271,283],"understanding":[59],"protein":[60,83,125,209],"life":[63],"cycle.":[64],"These":[65],"are":[66,112,215,261],"PTMs":[67],"AASs":[69,106],"often":[71],"modulate":[72],"alter":[76],"stability":[78],"localization":[80],"a":[82,85,89,124,136,181,216,284],"cell.":[86],"PSSKB":[87,195],"platform":[90,231,260],"integrates":[92],"all":[93,104],"necessary":[94],"tools":[95,111],"modeling":[97],"five":[99],"common":[100],"natural":[101],"modifications":[102],"canonical":[105],"proteins.":[108],"available":[110,237,277,290],"not":[113,170],"limited":[114],"local":[117],"database,":[118],"so":[119],"user":[121,198],"can":[122,251],"select":[123],"from":[126],"Uniprot":[127],"ID":[128],"or":[129],"PDB":[130],"ID.":[131],"result":[133],"will":[134],"be":[135,252],"three-dimensional":[137],"(3D)":[138],"representation":[139],"modified":[142,159],"structure,":[143,168],"as":[144,146],"well":[145],"an":[147],"analysis":[148],"performance":[154],"intact":[157],"structures":[160],"after":[161],"energy":[162],"minimization":[163],"compared":[164],"with":[165],"original":[167],"only":[171],"makes":[172],"it":[173],"possible":[174],"evaluate":[176],"AAS/PTM":[177],"influence":[178],"protein's":[182],"characteristics":[183],"but":[184],"also":[185,289],"use":[187],"3D":[189],"model":[190],"further":[192],"studies.":[193],"Additionally,":[194],"enables":[196],"search,":[200],"align,":[201],"overlay,":[202],"exact":[206],"coordinates":[207],"fragments.":[211],"search":[213],"results":[214],"set":[217],"motifs":[220],"similar":[221],"query":[224],"ranked":[226],"by":[227],"statistical":[228],"significance.":[229],"fully":[233],"functional":[234],"publicly":[236],"at":[238,254,278,291],"https://psskb.org/.":[239],"No":[240],"registration":[241],"required":[243],"access":[245],"platform.":[247],"A":[248],"tutorial":[249],"video":[250],"found":[253],"https://psskb.org/page/about.":[255],"Services":[256],"provided":[257],"based":[262],"previously":[264],"developed":[265],"published":[267],"software.":[268],"SCPacker":[269],"applied":[270,282],"PTM":[272],"Modeling":[273],"AAS":[275],"services":[276],"GitHub":[279,292],"(https://github.com/protdb/SCPacker).":[280],"SaFoldNet":[281],"Similar":[285],"Search":[286],"service":[287],"(https://github.com/protdb/ABBNet).":[293]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-01-30T00:00:00"}
