{"id":"https://openalex.org/W2001514809","doi":"https://doi.org/10.1002/jcc.540140705","title":"A critical comparison of search algorithms applied to the optimization of protein side\u2010chain conformations","display_name":"A critical comparison of search algorithms applied to the optimization of protein side\u2010chain conformations","publication_year":1993,"publication_date":"1993-07-01","ids":{"openalex":"https://openalex.org/W2001514809","doi":"https://doi.org/10.1002/jcc.540140705","mag":"2001514809"},"language":"en","primary_location":{"id":"doi:10.1002/jcc.540140705","is_oa":false,"landing_page_url":"https://doi.org/10.1002/jcc.540140705","pdf_url":null,"source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002795410","display_name":"Pierre Tuff\u00e9ry","orcid":"https://orcid.org/0000-0003-1033-9895"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"P. Tuff\u00e9ry","raw_affiliation_strings":["Laboratoire de Biochimie The\u0301orique, CNRS URA77, Institut de Biologie Physico-Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France","Laboratoire de Biochimie Th\u00e9orique, CNRS URA77, Institut de Biologie Physico\u2010Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biochimie The\u0301orique, CNRS URA77, Institut de Biologie Physico-Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France","institution_ids":["https://openalex.org/I4210107423","https://openalex.org/I4210094297","https://openalex.org/I39804081","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire de Biochimie Th\u00e9orique, CNRS URA77, Institut de Biologie Physico\u2010Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":null,"display_name":"C. Etchebest","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C. Etchebest","raw_affiliation_strings":["Laboratoire de Biochimie The\u0301orique, CNRS URA77, Institut de Biologie Physico-Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France","Laboratoire de Biochimie Th\u00e9orique, CNRS URA77, Institut de Biologie Physico\u2010Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biochimie The\u0301orique, CNRS URA77, Institut de Biologie Physico-Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France","institution_ids":["https://openalex.org/I4210107423","https://openalex.org/I4210094297","https://openalex.org/I39804081","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire de Biochimie Th\u00e9orique, CNRS URA77, Institut de Biologie Physico\u2010Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058605559","display_name":"S. Hazout","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S. Hazout","raw_affiliation_strings":["Unite\u0301 de Recherches Biomathe\u0301matiques et Biostatistiques, INSERM U263, Universite\u0301 Paris 7, 2, place Jussieu, 75251 Paris, France","Unit\u00e9 de Recherches Biomath\u00e9matiques et Biostatistiques, INSERM U263, Universit\u00e9 Paris 7, 2, place Jussieu, 75251 Paris, France"],"affiliations":[{"raw_affiliation_string":"Unite\u0301 de Recherches Biomathe\u0301matiques et Biostatistiques, INSERM U263, Universite\u0301 Paris 7, 2, place Jussieu, 75251 Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]},{"raw_affiliation_string":"Unit\u00e9 de Recherches Biomath\u00e9matiques et Biostatistiques, INSERM U263, Universit\u00e9 Paris 7, 2, place Jussieu, 75251 Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027973612","display_name":"Richard Lavery","orcid":"https://orcid.org/0000-0001-9901-6640"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"R. Lavery","raw_affiliation_strings":["Laboratoire de Biochimie The\u0301orique, CNRS URA77, Institut de Biologie Physico-Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France","Laboratoire de Biochimie Th\u00e9orique, CNRS URA77, Institut de Biologie Physico\u2010Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biochimie The\u0301orique, CNRS URA77, Institut de Biologie Physico-Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France","institution_ids":["https://openalex.org/I4210107423","https://openalex.org/I4210094297","https://openalex.org/I39804081","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire de Biochimie Th\u00e9orique, CNRS URA77, Institut de Biologie Physico\u2010Chimique, 13, rue Pierre et Marie Curie, 75005 Paris, France","institution_ids":["https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5002795410"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210094297","https://openalex.org/I4210107423"],"apc_list":{"value":4840,"currency":"USD","value_usd":4840},"apc_paid":null,"fwci":3.075,"has_fulltext":false,"cited_by_count":68,"citation_normalized_percentile":{"value":0.92403511,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"14","issue":"7","first_page":"790","last_page":"798"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.8089756369590759},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6076419949531555},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.6073389053344727},{"id":"https://openalex.org/keywords/globular-protein","display_name":"Globular protein","score":0.5907068252563477},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5376092195510864},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.49512186646461487},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4594796895980835},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.4524655342102051},{"id":"https://openalex.org/keywords/side-chain","display_name":"Side chain","score":0.43572917580604553},{"id":"https://openalex.org/keywords/chain","display_name":"Chain (unit)","score":0.4272151589393616},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.4243414103984833},{"id":"https://openalex.org/keywords/adaptive-simulated-annealing","display_name":"Adaptive simulated annealing","score":0.4235702455043793},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2924194633960724},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2381618618965149},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.11938014626502991},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10081988573074341},{"id":"https://openalex.org/keywords/polymer","display_name":"Polymer","score":0.06709641218185425}],"concepts":[{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.8089756369590759},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6076419949531555},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.6073389053344727},{"id":"https://openalex.org/C105168689","wikidata":"https://www.wikidata.org/wiki/Q901969","display_name":"Globular protein","level":2,"score":0.5907068252563477},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5376092195510864},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.49512186646461487},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4594796895980835},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.4524655342102051},{"id":"https://openalex.org/C204921945","wikidata":"https://www.wikidata.org/wiki/Q899689","display_name":"Side chain","level":3,"score":0.43572917580604553},{"id":"https://openalex.org/C199185054","wikidata":"https://www.wikidata.org/wiki/Q552299","display_name":"Chain (unit)","level":2,"score":0.4272151589393616},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.4243414103984833},{"id":"https://openalex.org/C46714192","wikidata":"https://www.wikidata.org/wiki/Q4680763","display_name":"Adaptive simulated annealing","level":3,"score":0.4235702455043793},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2924194633960724},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2381618618965149},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.11938014626502991},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10081988573074341},{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.06709641218185425},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/jcc.540140705","is_oa":false,"landing_page_url":"https://doi.org/10.1002/jcc.540140705","pdf_url":null,"source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W67864273","https://openalex.org/W1508596864","https://openalex.org/W1516916562","https://openalex.org/W1543881158","https://openalex.org/W1966041739","https://openalex.org/W1968566598","https://openalex.org/W1972728295","https://openalex.org/W1987977716","https://openalex.org/W1992739911","https://openalex.org/W2009830173","https://openalex.org/W2019076206","https://openalex.org/W2024060531","https://openalex.org/W2051923979","https://openalex.org/W2056760934","https://openalex.org/W2076846342","https://openalex.org/W2113443707","https://openalex.org/W2115042613","https://openalex.org/W2151676833","https://openalex.org/W2165812178","https://openalex.org/W2166843422","https://openalex.org/W3023540311","https://openalex.org/W4230223507"],"related_works":["https://openalex.org/W2077092686","https://openalex.org/W2261837478","https://openalex.org/W3007136692","https://openalex.org/W1967687468","https://openalex.org/W2089397391","https://openalex.org/W2002077985","https://openalex.org/W173512906","https://openalex.org/W2382432451","https://openalex.org/W2394090522","https://openalex.org/W2979021254"],"abstract_inverted_index":{"Abstract":[0],"Three":[1],"different":[2,64],"optimization":[3],"algorithms":[4],"are":[5,72],"applied":[6,55],"to":[7,56,78],"solving":[8],"the":[9,13,50,57,63,75],"problem":[10],"of":[11,21,52,62],"finding":[12],"best":[14],"side\u2010chain":[15],"conformations":[16],"with":[17,49],"a":[18,41],"test":[19],"set":[20],"14":[22],"globular":[23],"proteins":[24],"having":[25],"known":[26],"crystallographic":[27],"conformations.":[28],"It":[29],"is":[30],"shown":[31],"that":[32],"simulated":[33,53],"annealing,":[34],"simple":[35],"and":[36,40],"modified":[37],"genetic":[38],"algorithms,":[39,65],"heuristic":[42],"combinatorial":[43],"approach":[44,77],"achieve":[45],"similar":[46],"optimal":[47,76],"solutions,":[48],"exception":[51],"annealing":[54],"largest":[58],"proteins.":[59],"The":[60],"efficiency":[61],"however,":[66],"shows":[67],"wide":[68],"variations.":[69],"General":[70],"conclusions":[71],"drawn":[73],"concerning":[74],"such":[79],"problems.":[80],"\u00a9":[81],"1993":[82],"John":[83],"Wiley":[84],"&amp;":[85],"Sons,":[86],"Inc.":[87]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-25T23:56:10.502304","created_date":"2025-10-10T00:00:00"}
