{"id":"https://openalex.org/W2349157818","doi":"https://doi.org/10.1002/jcc.24392","title":"Ecoupling server: A tool to compute and analyze electronic couplings","display_name":"Ecoupling server: A tool to compute and analyze electronic couplings","publication_year":2016,"publication_date":"2016-05-08","ids":{"openalex":"https://openalex.org/W2349157818","doi":"https://doi.org/10.1002/jcc.24392","mag":"2349157818","pmid":"https://pubmed.ncbi.nlm.nih.gov/27157013"},"language":"en","primary_location":{"id":"doi:10.1002/jcc.24392","is_oa":false,"landing_page_url":"https://doi.org/10.1002/jcc.24392","pdf_url":null,"source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hdl.handle.net/2117/90111","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029965580","display_name":"Israel Cabeza de Vaca","orcid":"https://orcid.org/0000-0002-6208-1091"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}],"countries":["ES","US"],"is_corresponding":true,"raw_author_name":"Israel Cabeza de Vaca","raw_affiliation_strings":["Department of Chemistry Yale University New Haven Connecticut 06520\u20108107","Joint BSC\u2010IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group Nexus II, C/Jordi Girona, 29 Barcelona 08034 Spain","Joint BSC-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group, Nexus II, C/Jordi Girona, 29, Barcelona, 08034 Spain","These authors contributed equally to this work","Department of Chemistry, Yale University, New Haven, Connecticut, 06520-8107"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry Yale University New Haven Connecticut 06520\u20108107","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Joint BSC\u2010IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group Nexus II, C/Jordi Girona, 29 Barcelona 08034 Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]},{"raw_affiliation_string":"Joint BSC-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group, Nexus II, C/Jordi Girona, 29, Barcelona, 08034 Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]},{"raw_affiliation_string":"These authors contributed equally to this work","institution_ids":[]},{"raw_affiliation_string":"Department of Chemistry, Yale University, New Haven, Connecticut, 06520-8107","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060128195","display_name":"Sandra Acebes","orcid":"https://orcid.org/0000-0001-8854-654X"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Sandra Acebes","raw_affiliation_strings":["Joint BSC\u2010IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group Nexus II, C/Jordi Girona, 29 Barcelona 08034 Spain","These authors contributed equally to this work","Joint BSC-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group, Nexus II, C/Jordi Girona, 29, Barcelona, 08034 Spain"],"affiliations":[{"raw_affiliation_string":"Joint BSC\u2010IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group Nexus II, C/Jordi Girona, 29 Barcelona 08034 Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]},{"raw_affiliation_string":"These authors contributed equally to this work","institution_ids":[]},{"raw_affiliation_string":"Joint BSC-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group, Nexus II, C/Jordi Girona, 29, Barcelona, 08034 Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060698638","display_name":"V\u0131\u0301ctor Guallar","orcid":"https://orcid.org/0000-0002-4580-1114"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Victor Guallar","raw_affiliation_strings":["Instituci\u00f3 Catalana De Recerca I Estudis Avan\u00e7ats (ICREA) Barcelona Spain","Joint BSC\u2010IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group Nexus II, C/Jordi Girona, 29 Barcelona 08034 Spain","Joint BSC-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group, Nexus II, C/Jordi Girona, 29, Barcelona, 08034 Spain"],"affiliations":[{"raw_affiliation_string":"Instituci\u00f3 Catalana De Recerca I Estudis Avan\u00e7ats (ICREA) Barcelona Spain","institution_ids":["https://openalex.org/I11932220"]},{"raw_affiliation_string":"Joint BSC\u2010IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group Nexus II, C/Jordi Girona, 29 Barcelona 08034 Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]},{"raw_affiliation_string":"Joint BSC-IRB Research Program in Computational Biology, Barcelona Supercomputing Center, Life Science Department, Electronic and Atomic Modeling Group, Nexus II, C/Jordi Girona, 29, Barcelona, 08034 Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029965580"],"corresponding_institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I32971472","https://openalex.org/I9617848"],"apc_list":{"value":4840,"currency":"USD","value_usd":4840},"apc_paid":null,"fwci":0.3725,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.64650904,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"37","issue":"18","first_page":"1740","last_page":"1745"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10913","display_name":"Molecular Junctions and Nanostructures","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10913","display_name":"Molecular Junctions and Nanostructures","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12381","display_name":"Electron Spin Resonance Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10611","display_name":"Organic Light-Emitting Diodes Research","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/login","display_name":"Login","score":0.8360196352005005},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7707946300506592},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7258024215698242},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5406164526939392},{"id":"https://openalex.org/keywords/user-friendly","display_name":"User Friendly","score":0.509608268737793},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.485696405172348},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.42295101284980774},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.39843273162841797},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.341594934463501}],"concepts":[{"id":"https://openalex.org/C113324615","wikidata":"https://www.wikidata.org/wiki/Q472302","display_name":"Login","level":2,"score":0.8360196352005005},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7707946300506592},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7258024215698242},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5406164526939392},{"id":"https://openalex.org/C61437842","wikidata":"https://www.wikidata.org/wiki/Q281291","display_name":"User Friendly","level":2,"score":0.509608268737793},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.485696405172348},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.42295101284980774},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.39843273162841797},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.341594934463501},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1002/jcc.24392","is_oa":false,"landing_page_url":"https://doi.org/10.1002/jcc.24392","pdf_url":null,"source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},{"id":"pmid:27157013","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27157013","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational chemistry","raw_type":null},{"id":"pmh:oai:upcommons.upc.edu:2117/90111","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/90111","pdf_url":null,"source":{"id":"https://openalex.org/S4377196262","display_name":"UPCommons institutional repository (Universitat Polit\u00e8cnica de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9617848","host_organization_name":"Universitat Polit\u00e8cnica de Catalunya","host_organization_lineage":["https://openalex.org/I9617848"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:upcommons.upc.edu:2117/90111","is_oa":true,"landing_page_url":"https://hdl.handle.net/2117/90111","pdf_url":null,"source":{"id":"https://openalex.org/S4377196262","display_name":"UPCommons institutional repository (Universitat Polit\u00e8cnica de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9617848","host_organization_name":"Universitat Polit\u00e8cnica de Catalunya","host_organization_lineage":["https://openalex.org/I9617848"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W642437637","https://openalex.org/W1632087640","https://openalex.org/W1965428140","https://openalex.org/W1965459698","https://openalex.org/W1973816733","https://openalex.org/W1974380996","https://openalex.org/W1976545668","https://openalex.org/W1978728011","https://openalex.org/W1982904490","https://openalex.org/W1982954635","https://openalex.org/W1989681930","https://openalex.org/W2000815209","https://openalex.org/W2001270915","https://openalex.org/W2007065612","https://openalex.org/W2010660548","https://openalex.org/W2019146805","https://openalex.org/W2019330110","https://openalex.org/W2019678428","https://openalex.org/W2022950330","https://openalex.org/W2026150972","https://openalex.org/W2031904472","https://openalex.org/W2037523556","https://openalex.org/W2046762335","https://openalex.org/W2049082977","https://openalex.org/W2055729674","https://openalex.org/W2057264528","https://openalex.org/W2059197962","https://openalex.org/W2064521809","https://openalex.org/W2067718414","https://openalex.org/W2069118865","https://openalex.org/W2070774414","https://openalex.org/W2076950426","https://openalex.org/W2080706189","https://openalex.org/W2084408684","https://openalex.org/W2091793609","https://openalex.org/W2095695247","https://openalex.org/W2100077118","https://openalex.org/W2105348198","https://openalex.org/W2128887552","https://openalex.org/W2141362681","https://openalex.org/W2149541638","https://openalex.org/W2150825951","https://openalex.org/W2154278700","https://openalex.org/W2161179528","https://openalex.org/W2166856607","https://openalex.org/W2262009783","https://openalex.org/W2326576054","https://openalex.org/W2326712313","https://openalex.org/W2335158344","https://openalex.org/W2466276775"],"related_works":["https://openalex.org/W4256170434","https://openalex.org/W4233948907","https://openalex.org/W4235220108","https://openalex.org/W4315650027","https://openalex.org/W4238894392","https://openalex.org/W2357607877","https://openalex.org/W4238771742","https://openalex.org/W4235839583","https://openalex.org/W4311722428","https://openalex.org/W4252054168"],"abstract_inverted_index":{"Electron":[0],"transfer":[1],"processes":[2],"are":[3],"often":[4],"studied":[5],"through":[6],"the":[7,12,92],"evaluation":[8,56],"and":[9,29,34,57,67,81,84,90,105,115],"analysis":[10,58],"of":[11,44,59],"electronic":[13,36,60],"coupling":[14,37],"(EC).":[15],"Since":[16],"most":[17],"standard":[18],"QM":[19,80],"codes":[20],"do":[21],"not":[22],"provide":[23,51],"readily":[24],"such":[25],"a":[26,52],"measure,":[27],"additional,":[28],"user-friendly":[30],"tools":[31],"to":[32,50,88,117],"compute":[33],"analyze":[35,91],"from":[38,78],"external":[39],"wave":[40],"functions":[41],"will":[42],"be":[43],"high":[45],"value.":[46],"The":[47,95],"first":[48],"server":[49,75,97,112],"friendly":[53],"interface":[54],"for":[55],"couplings":[61],"under":[62],"two":[63],"different":[64],"approximations":[65],"(FDC":[66],"GMH)":[68],"is":[69,107,113],"presented":[70],"in":[71,101],"this":[72],"communication.":[73],"Ecoupling":[74,111],"accepts":[76],"inputs":[77],"common":[79],"QM/MM":[82],"software":[83],"provides":[85],"useful":[86],"plots":[87],"understand":[89],"results":[93],"easily.":[94],"web":[96],"has":[98],"been":[99],"implemented":[100],"CGI-python":[102],"using":[103],"Apache":[104],"it":[106],"accessible":[108],"at":[109],"http://ecouplingserver.bsc.es.":[110],"free":[114],"open":[116],"all":[118],"users":[119],"without":[120],"login.":[121],"\u00a9":[122],"2016":[123],"Wiley":[124],"Periodicals,":[125],"Inc.":[126]},"counts_by_year":[{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
