{"id":"https://openalex.org/W2171692358","doi":"https://doi.org/10.1002/cpe.3236","title":"A genome\u2010wide association study platform built on iPlant cyber\u2010infrastructure","display_name":"A genome\u2010wide association study platform built on iPlant cyber\u2010infrastructure","publication_year":2014,"publication_date":"2014-03-06","ids":{"openalex":"https://openalex.org/W2171692358","doi":"https://doi.org/10.1002/cpe.3236","mag":"2171692358"},"language":"en","primary_location":{"id":"doi:10.1002/cpe.3236","is_oa":false,"landing_page_url":"https://doi.org/10.1002/cpe.3236","pdf_url":null,"source":{"id":"https://openalex.org/S11065456","display_name":"Concurrency and Computation Practice and Experience","issn_l":"1532-0626","issn":["1532-0626","1532-0634"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Concurrency and Computation: Practice and Experience","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100407769","display_name":"Liya Wang","orcid":"https://orcid.org/0000-0001-6810-1332"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Liya Wang","raw_affiliation_strings":["Cold Spring Harbor Laboratory  Cold Spring Harbor USA","Cold Spring Harbor Laboratory, Cold Spring Harbor, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory  Cold Spring Harbor USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"Cold Spring Harbor Laboratory, Cold Spring Harbor, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077105419","display_name":"Doreen Ware","orcid":"https://orcid.org/0000-0002-8125-3821"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Doreen Ware","raw_affiliation_strings":["Cold Spring Harbor Laboratory  Cold Spring Harbor USA","U.S. Department of Agriculture (USDA)  Cold Spring Harbor USA","U.S. Department of Agriculture (USDA), Cold Spring Harbor, USA","Cold Spring Harbor Laboratory, Cold Spring Harbor, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory  Cold Spring Harbor USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"U.S. Department of Agriculture (USDA)  Cold Spring Harbor USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"U.S. Department of Agriculture (USDA), Cold Spring Harbor, USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"Cold Spring Harbor Laboratory, Cold Spring Harbor, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037280551","display_name":"Carol Lushbough","orcid":"https://orcid.org/0000-0003-3838-5690"},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carol Lushbough","raw_affiliation_strings":["University of South Dakota  Vermillion USA","University of South Dakota, Vermillion, USA"],"affiliations":[{"raw_affiliation_string":"University of South Dakota  Vermillion USA","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"University of South Dakota, Vermillion, USA","institution_ids":["https://openalex.org/I189957204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045622847","display_name":"Nirav Merchant","orcid":"https://orcid.org/0000-0002-1988-8180"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nirav Merchant","raw_affiliation_strings":["University of Arizona  Tucson USA","University of Arizona, Tucson, USA"],"affiliations":[{"raw_affiliation_string":"University of Arizona  Tucson USA","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"University of Arizona, Tucson, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052076713","display_name":"Lincoln Stein","orcid":"https://orcid.org/0000-0002-1983-4588"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lincoln Stein","raw_affiliation_strings":["Ontario Institute for Cancer Research  Toronto Canada","University of Toronto  Toronto Canada","Ontario Institute for Cancer Research, Toronto, Canada","University of Toronto, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"Ontario Institute for Cancer Research  Toronto Canada","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"University of Toronto  Toronto Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Ontario Institute for Cancer Research, Toronto, Canada","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"University of Toronto, Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100407769"],"corresponding_institution_ids":["https://openalex.org/I2750212522"],"apc_list":{"value":4740,"currency":"USD","value_usd":4740},"apc_paid":null,"fwci":0.4183,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.64204674,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"27","issue":"2","first_page":"420","last_page":"432"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7711879014968872},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5602489113807678},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.45590609312057495},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4319155216217041},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.42885372042655945},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4229777753353119},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.25081491470336914},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15508109331130981}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7711879014968872},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5602489113807678},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.45590609312057495},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4319155216217041},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.42885372042655945},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4229777753353119},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.25081491470336914},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15508109331130981},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1002/cpe.3236","is_oa":false,"landing_page_url":"https://doi.org/10.1002/cpe.3236","pdf_url":null,"source":{"id":"https://openalex.org/S11065456","display_name":"Concurrency and Computation Practice and Experience","issn_l":"1532-0626","issn":["1532-0626","1532-0634"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Concurrency and Computation: Practice and Experience","raw_type":"journal-article"},{"id":"pmh:oai:repository.cshl.edu:31237","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G1515058201","display_name":null,"funder_award_id":"1265383","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1600604293","https://openalex.org/W1782284189","https://openalex.org/W1864995317","https://openalex.org/W1970311849","https://openalex.org/W1972171558","https://openalex.org/W1986265706","https://openalex.org/W1988351368","https://openalex.org/W1993373022","https://openalex.org/W2025306791","https://openalex.org/W2025947856","https://openalex.org/W2044238386","https://openalex.org/W2048902242","https://openalex.org/W2055458992","https://openalex.org/W2072602629","https://openalex.org/W2088486634","https://openalex.org/W2090950329","https://openalex.org/W2098126593","https://openalex.org/W2099629766","https://openalex.org/W2107347656","https://openalex.org/W2108446207","https://openalex.org/W2109085886","https://openalex.org/W2110035718","https://openalex.org/W2117608012","https://openalex.org/W2118325643","https://openalex.org/W2119144239","https://openalex.org/W2122186098","https://openalex.org/W2123466824","https://openalex.org/W2131354461","https://openalex.org/W2136773811","https://openalex.org/W2141916112","https://openalex.org/W2146374090","https://openalex.org/W2159474015","https://openalex.org/W2161633633","https://openalex.org/W4300890413"],"related_works":["https://openalex.org/W4322629366","https://openalex.org/W2808989540","https://openalex.org/W2397053934","https://openalex.org/W1039292361","https://openalex.org/W2551093110","https://openalex.org/W4237919137","https://openalex.org/W3184179822","https://openalex.org/W3095362084","https://openalex.org/W2148016376","https://openalex.org/W3003361536"],"abstract_inverted_index":{"Summary":[0],"We":[1],"demonstrate":[2],"a":[3],"flexible":[4],"genome\u2010wide":[5],"association":[6],"study":[7,24],"platform":[8,16],"built":[9],"upon":[10],"the":[11,47],"iPlant":[12,53],"Collaborative":[13],"Cyber\u2010infrastructure.":[14],"The":[15],"supports":[17],"big":[18],"data":[19,30],"management,":[20],"sharing,":[21],"and":[22,28,41,56],"large\u2010scale":[23],"of":[25],"both":[26,52],"genotype":[27],"phenotype":[29],"on":[31],"clusters.":[32],"End":[33],"users":[34],"can":[35],"add":[36],"their":[37],"own":[38],"analysis":[39,44],"tools":[40],"create":[42],"customized":[43],"workflows":[45],"through":[46],"graphical":[48],"user":[49],"interfaces":[50],"in":[51],"Discovery":[54],"Environment":[55],"BioExtract":[57],"server.":[58],"Copyright":[59],"\u00a9":[60],"2014":[61],"John":[62],"Wiley":[63],"&amp;":[64],"Sons,":[65],"Ltd.":[66]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-20T23:13:51.555489","created_date":"2025-10-10T00:00:00"}
