{"id":"https://openalex.org/W4242424786","doi":"https://doi.org/10.1002/(sici)1097-024x(199707)27:7<851::aid-spe108>3.0.co;2-d","title":"String Matching in the DNA Alphabet","display_name":"String Matching in the DNA Alphabet","publication_year":1997,"publication_date":"1997-07-01","ids":{"openalex":"https://openalex.org/W4242424786","doi":"https://doi.org/10.1002/(sici)1097-024x(199707)27:7<851::aid-spe108>3.0.co;2-d"},"language":"en","primary_location":{"id":"doi:10.1002/(sici)1097-024x(199707)27:7<851::aid-spe108>3.0.co;2-d","is_oa":false,"landing_page_url":"https://doi.org/10.1002/(sici)1097-024x(199707)27:7<851::aid-spe108>3.0.co;2-d","pdf_url":null,"source":{"id":"https://openalex.org/S122199241","display_name":"Software Practice and Experience","issn_l":"0038-0644","issn":["0038-0644","1097-024X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Software: Practice and Experience","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033294598","display_name":"Jorma Tarhio","orcid":"https://orcid.org/0000-0003-2455-1985"},"institutions":[{"id":"https://openalex.org/I4210106278","display_name":"Joensuu Science Park","ror":"https://ror.org/01j45tp19","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210106278"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"JORMA TARHIO","raw_affiliation_strings":["Department of Computer Science, University of Joensuu, P.O. Box 111, FIN-80101 Joensuu, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Joensuu, P.O. Box 111, FIN-80101 Joensuu, Finland","institution_ids":["https://openalex.org/I4210106278"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003472469","display_name":"Hannu Peltola","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"HANNU PELTOLA","raw_affiliation_strings":["Department of Computer Science, P.O. Box 26 (Teollisuuskatu 23), FIN-00014 University of Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, P.O. Box 26 (Teollisuuskatu 23), FIN-00014 University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5033294598"],"corresponding_institution_ids":["https://openalex.org/I4210106278"],"apc_list":{"value":4220,"currency":"USD","value_usd":4220},"apc_paid":null,"fwci":0.585,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.79858729,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"27","issue":"7","first_page":"851","last_page":"861"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/alphabet","display_name":"Alphabet","score":0.8163681030273438},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.6015359163284302},{"id":"https://openalex.org/keywords/string-searching-algorithm","display_name":"String searching algorithm","score":0.5744022130966187},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5506498217582703},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.5164754390716553},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.48108336329460144},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4370579719543457},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.4359270930290222},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3273826241493225},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.28156861662864685},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13618820905685425},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10507333278656006},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07849347591400146},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.05970883369445801}],"concepts":[{"id":"https://openalex.org/C112876837","wikidata":"https://www.wikidata.org/wiki/Q837518","display_name":"Alphabet","level":2,"score":0.8163681030273438},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.6015359163284302},{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.5744022130966187},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5506498217582703},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.5164754390716553},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.48108336329460144},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4370579719543457},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.4359270930290222},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3273826241493225},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28156861662864685},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13618820905685425},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10507333278656006},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07849347591400146},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.05970883369445801},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/(sici)1097-024x(199707)27:7<851::aid-spe108>3.0.co;2-d","is_oa":false,"landing_page_url":"https://doi.org/10.1002/(sici)1097-024x(199707)27:7<851::aid-spe108>3.0.co;2-d","pdf_url":null,"source":{"id":"https://openalex.org/S122199241","display_name":"Software Practice and Experience","issn_l":"0038-0644","issn":["0038-0644","1097-024X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Software: Practice and Experience","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3145288231","https://openalex.org/W2371263218","https://openalex.org/W2092552144","https://openalex.org/W2943461603","https://openalex.org/W2354196777","https://openalex.org/W2965473297","https://openalex.org/W2257399947","https://openalex.org/W2248278495","https://openalex.org/W2386746909","https://openalex.org/W2108265183"],"abstract_inverted_index":{"Searching":[0],"for":[1],"long":[2],"DNA":[3],"strings":[4],"is":[5,14,22,36],"studied.":[6],"A":[7],"q-gram":[8],"variation":[9],"of":[10],"the":[11,26,33],"Boyer\u2013Moore":[12],"algorithm":[13,35],"considered.":[15],"An":[16],"alphabet":[17],"transformation":[18],"with":[19],"precomputed":[20],"tables":[21],"utilized":[23],"to":[24],"reduce":[25],"processing":[27],"time.":[28],"Experimental":[29],"results":[30],"show":[31],"that":[32],"new":[34],"efficient":[37],"in":[38],"practice.":[39],"\u00a9":[40],"1997":[41],"John":[42],"Wiley":[43],"&":[44],"Sons,":[45],"Ltd.":[46]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
