{"id":"https://openalex.org/W2056099853","doi":"https://doi.org/10.1002/(sici)1096-987x(20000430)21:6<446::aid-jcc4>3.0.co;2-s","title":"PEPCAT?A new tool for conformational analysis of peptides","display_name":"PEPCAT?A new tool for conformational analysis of peptides","publication_year":2000,"publication_date":"2000-04-30","ids":{"openalex":"https://openalex.org/W2056099853","doi":"https://doi.org/10.1002/(sici)1096-987x(20000430)21:6<446::aid-jcc4>3.0.co;2-s","mag":"2056099853"},"language":"en","primary_location":{"id":"doi:10.1002/(sici)1096-987x(20000430)21:6<446::aid-jcc4>3.0.co;2-s","is_oa":false,"landing_page_url":"https://doi.org/10.1002/(sici)1096-987x(20000430)21:6<446::aid-jcc4>3.0.co;2-s","pdf_url":null,"source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042076747","display_name":"Mark F. O'Donohue","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123010","display_name":"Ludwig Cancer Research","ror":"https://ror.org/02vh2pt65","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210123010","https://openalex.org/I4210150094"]},{"id":"https://openalex.org/I1320473756","display_name":"The Royal Melbourne Hospital","ror":"https://ror.org/005bvs909","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1320473756","https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"M. F. O'Donohue","raw_affiliation_strings":["Ludwig Institute for Cancer Research and Cooperative Research Center for Cellular Growth Factors, P.O. Royal Melbourne Hospital, Parkville, Victoria 3050, Australia"],"affiliations":[{"raw_affiliation_string":"Ludwig Institute for Cancer Research and Cooperative Research Center for Cellular Growth Factors, P.O. Royal Melbourne Hospital, Parkville, Victoria 3050, Australia","institution_ids":["https://openalex.org/I4210123010","https://openalex.org/I1320473756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013074202","display_name":"E. Minasian","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"E. Minasian","raw_affiliation_strings":["Department of Biochemistry & Molecular Biology, Melbourne University, Parkville, Victoria 3052, Australia","**Department of Biochemistry and Molecular Biology, Melbourne University, Parkville, Victoria 3052, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry & Molecular Biology, Melbourne University, Parkville, Victoria 3052, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"**Department of Biochemistry and Molecular Biology, Melbourne University, Parkville, Victoria 3052, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012207449","display_name":"Sydney Leach","orcid":"https://orcid.org/0000-0002-2058-0247"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"S. J. Leach","raw_affiliation_strings":["Department of Biochemistry & Molecular Biology, Melbourne University, Parkville, Victoria 3052, Australia","**Department of Biochemistry and Molecular Biology, Melbourne University, Parkville, Victoria 3052, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry & Molecular Biology, Melbourne University, Parkville, Victoria 3052, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"**Department of Biochemistry and Molecular Biology, Melbourne University, Parkville, Victoria 3052, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053331129","display_name":"Antony W. Burgess","orcid":"https://orcid.org/0000-0003-3275-9209"},"institutions":[{"id":"https://openalex.org/I1320473756","display_name":"The Royal Melbourne Hospital","ror":"https://ror.org/005bvs909","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1320473756","https://openalex.org/I4210158168"]},{"id":"https://openalex.org/I4210123010","display_name":"Ludwig Cancer Research","ror":"https://ror.org/02vh2pt65","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210123010","https://openalex.org/I4210150094"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"A. W. Burgess","raw_affiliation_strings":["Ludwig Institute for Cancer Research and Cooperative Research Center for Cellular Growth Factors, P.O. Royal Melbourne Hospital, Parkville, Victoria 3050, Australia"],"affiliations":[{"raw_affiliation_string":"Ludwig Institute for Cancer Research and Cooperative Research Center for Cellular Growth Factors, P.O. Royal Melbourne Hospital, Parkville, Victoria 3050, Australia","institution_ids":["https://openalex.org/I4210123010","https://openalex.org/I1320473756"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111602167","display_name":"Herbert R. Treutlein","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123010","display_name":"Ludwig Cancer Research","ror":"https://ror.org/02vh2pt65","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210123010","https://openalex.org/I4210150094"]},{"id":"https://openalex.org/I1320473756","display_name":"The Royal Melbourne Hospital","ror":"https://ror.org/005bvs909","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1320473756","https://openalex.org/I4210158168"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"H. R. Treutlein","raw_affiliation_strings":["Ludwig Institute for Cancer Research and Cooperative Research Center for Cellular Growth Factors, P.O. Royal Melbourne Hospital, Parkville, Victoria 3050, Australia"],"affiliations":[{"raw_affiliation_string":"Ludwig Institute for Cancer Research and Cooperative Research Center for Cellular Growth Factors, P.O. Royal Melbourne Hospital, Parkville, Victoria 3050, Australia","institution_ids":["https://openalex.org/I4210123010","https://openalex.org/I1320473756"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5111602167"],"corresponding_institution_ids":["https://openalex.org/I1320473756","https://openalex.org/I4210123010"],"apc_list":{"value":4840,"currency":"USD","value_usd":4840},"apc_paid":null,"fwci":0.1195,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.47009403,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"21","issue":"6","first_page":"446","last_page":"461"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.6113815307617188},{"id":"https://openalex.org/keywords/pentapeptide-repeat","display_name":"Pentapeptide repeat","score":0.6059638857841492},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.601867139339447},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5592585206031799},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3472387492656708},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3372159004211426},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.22959911823272705},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2064398229122162},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07913866639137268}],"concepts":[{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.6113815307617188},{"id":"https://openalex.org/C45197812","wikidata":"https://www.wikidata.org/wiki/Q24787539","display_name":"Pentapeptide repeat","level":3,"score":0.6059638857841492},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.601867139339447},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5592585206031799},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3472387492656708},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3372159004211426},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.22959911823272705},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2064398229122162},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07913866639137268}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/(sici)1096-987x(20000430)21:6<446::aid-jcc4>3.0.co;2-s","is_oa":false,"landing_page_url":"https://doi.org/10.1002/(sici)1096-987x(20000430)21:6<446::aid-jcc4>3.0.co;2-s","pdf_url":null,"source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W225112278","https://openalex.org/W1521042556","https://openalex.org/W1602918181","https://openalex.org/W1968922060","https://openalex.org/W1973611342","https://openalex.org/W1976499671","https://openalex.org/W1978502680","https://openalex.org/W2004058380","https://openalex.org/W2016685072","https://openalex.org/W2022058405","https://openalex.org/W2025967846","https://openalex.org/W2025982583","https://openalex.org/W2027408247","https://openalex.org/W2034824829","https://openalex.org/W2037319728","https://openalex.org/W2045777307","https://openalex.org/W2047500710","https://openalex.org/W2053270175","https://openalex.org/W2053859275","https://openalex.org/W2061251163","https://openalex.org/W2070733891","https://openalex.org/W2072422813","https://openalex.org/W2075220720","https://openalex.org/W2079146411","https://openalex.org/W2084934811","https://openalex.org/W2091538386","https://openalex.org/W2094490751","https://openalex.org/W2095296924","https://openalex.org/W2108067237","https://openalex.org/W2132589721","https://openalex.org/W2152938920","https://openalex.org/W2162166182","https://openalex.org/W2162171655","https://openalex.org/W2168008491","https://openalex.org/W2611400920","https://openalex.org/W4230638849"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2033390716","https://openalex.org/W2412639817","https://openalex.org/W2059085488","https://openalex.org/W2054137507","https://openalex.org/W2022871331","https://openalex.org/W2032553414","https://openalex.org/W2030816783","https://openalex.org/W1995546445"],"abstract_inverted_index":{"We":[0],"report":[1],"a":[2,24,38,50,68,90,100],"new":[3],"technique":[4],"for":[5,32],"the":[6,46,62,65,75,79,95,104,115],"efficient":[7],"analysis":[8,77,117],"and":[9,13,16,41,59,83,98,120],"visualization":[10],"of":[11,56,64,78,81,89,92,99,118],"peptide":[12],"protein":[14],"conformations":[15],"conformational":[17,87,101,116],"relationships,":[18],"which":[19],"we":[20,73],"have":[21],"implemented":[22],"in":[23,103,122],"computer":[25],"program":[26],"called":[27],"PEPCAT.":[28],"PEPCAT":[29,76],"(an":[30],"abbreviation":[31],"Peptide":[33],"Conformational":[34],"Analysis":[35],"Tool)":[36],"provides":[37],"simple,":[39],"graphical,":[40],"flexible":[42],"framework":[43],"that":[44],"allows":[45],"user":[47],"to":[48,60,114],"define":[49],"specific":[51],"structural":[52],"feature":[53],"or":[54],"juxtaposition":[55],"amino":[57],"acids":[58],"follow":[61],"fate":[63],"motif":[66],"during":[67],"molecular":[69],"dynamics":[70],"simulation.":[71],"Here":[72],"describe":[74],"effects":[80],"environmental":[82],"chemical":[84],"modifications":[85],"on":[86],"preferences":[88],"regulator":[91],"hemopoiesis,":[93],"namely":[94],"pentapeptide":[96],"pyro-EEDCK,":[97],"transition":[102],"immunosuppressant":[105],"drug":[106],"cyclosporin":[107],"A.":[108],"PEPCAT,":[109],"however,":[110],"can":[111],"be":[112],"applied":[113],"peptides":[119],"proteins":[121],"general.":[123],"\u00a9":[124],"2000":[125,136],"John":[126],"Wiley":[127],"&":[128],"Sons,":[129],"Inc.":[130],"J":[131],"Comput":[132],"Chem":[133],"21:":[134],"446\u2013461,":[135]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
