{"id":"https://openalex.org/W2006671591","doi":"https://doi.org/10.1002/(sici)1096-987x(199605)17:7<910::aid-jcc14>3.0.co;2-e","title":"Conformational analysis of nucleic acid molecules with flexible furanose rings in dihedral angle space","display_name":"Conformational analysis of nucleic acid molecules with flexible furanose rings in dihedral angle space","publication_year":1996,"publication_date":"1996-05-01","ids":{"openalex":"https://openalex.org/W2006671591","doi":"https://doi.org/10.1002/(sici)1096-987x(199605)17:7<910::aid-jcc14>3.0.co;2-e","mag":"2006671591"},"language":"en","primary_location":{"id":"doi:10.1002/(sici)1096-987x(199605)17:7<910::aid-jcc14>3.0.co;2-e","is_oa":false,"landing_page_url":"https://doi.org/10.1002/(sici)1096-987x(199605)17:7<910::aid-jcc14>3.0.co;2-e","pdf_url":null,"source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110241827","display_name":"Masaki Tomimoto","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masaki Tomimoto","raw_affiliation_strings":["Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-01, Japan","Department of Chemistry, Graduate School of Science , Kyoto University , Sakyo-ku, Kyoto , 606-01 , Japan"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-01, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Department of Chemistry, Graduate School of Science , Kyoto University , Sakyo-ku, Kyoto , 606-01 , Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114245999","display_name":"Nobuhiro G\u014d","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Nobuhiro Go","raw_affiliation_strings":["Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-01, Japan","Department of Chemistry, Graduate School of Science , Kyoto University , Sakyo-ku, Kyoto , 606-01 , Japan"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-01, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Department of Chemistry, Graduate School of Science , Kyoto University , Sakyo-ku, Kyoto , 606-01 , Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045201764","display_name":"Hiroshi Wako","orcid":"https://orcid.org/0000-0002-8265-1223"},"institutions":[{"id":"https://openalex.org/I150744194","display_name":"Waseda University","ror":"https://ror.org/00ntfnx83","country_code":"JP","type":"education","lineage":["https://openalex.org/I150744194"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroshi Wako","raw_affiliation_strings":["School of Social Sciences, Waseda University, Nishi-Waseda, Shinjuku-ku, Tokyo 169-50, Japan","School of Social Sciences, Waseda University, Nishi\u2010Waseda, Shinjuku\u2010ku, Tokyo 169\u201050, Japan"],"affiliations":[{"raw_affiliation_string":"School of Social Sciences, Waseda University, Nishi-Waseda, Shinjuku-ku, Tokyo 169-50, Japan","institution_ids":["https://openalex.org/I150744194"]},{"raw_affiliation_string":"School of Social Sciences, Waseda University, Nishi\u2010Waseda, Shinjuku\u2010ku, Tokyo 169\u201050, Japan","institution_ids":["https://openalex.org/I150744194"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5114245999"],"corresponding_institution_ids":["https://openalex.org/I22299242"],"apc_list":{"value":4840,"currency":"USD","value_usd":4840},"apc_paid":null,"fwci":0.5365,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.62996805,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"17","issue":"7","first_page":"910","last_page":"917"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dihedral-angle","display_name":"Dihedral angle","score":0.9682121276855469},{"id":"https://openalex.org/keywords/furanose","display_name":"Furanose","score":0.899138331413269},{"id":"https://openalex.org/keywords/pseudorotation","display_name":"Pseudorotation","score":0.7764804363250732},{"id":"https://openalex.org/keywords/bond-length","display_name":"Bond length","score":0.5851046442985535},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.5143331289291382},{"id":"https://openalex.org/keywords/molecular-geometry","display_name":"Molecular geometry","score":0.4907001256942749},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.42484793066978455},{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.4192241430282593},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4100314676761627},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.407735675573349},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3831428289413452},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36123186349868774},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.3529929220676422},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.3218613862991333},{"id":"https://openalex.org/keywords/ring","display_name":"Ring (chemistry)","score":0.27814167737960815},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.15952634811401367},{"id":"https://openalex.org/keywords/hydrogen-bond","display_name":"Hydrogen bond","score":0.13937535881996155},{"id":"https://openalex.org/keywords/crystal-structure","display_name":"Crystal structure","score":0.07695990800857544}],"concepts":[{"id":"https://openalex.org/C89025888","wikidata":"https://www.wikidata.org/wiki/Q911907","display_name":"Dihedral angle","level":4,"score":0.9682121276855469},{"id":"https://openalex.org/C173985810","wikidata":"https://www.wikidata.org/wiki/Q264492","display_name":"Furanose","level":3,"score":0.899138331413269},{"id":"https://openalex.org/C2779413573","wikidata":"https://www.wikidata.org/wiki/Q556992","display_name":"Pseudorotation","level":3,"score":0.7764804363250732},{"id":"https://openalex.org/C155860418","wikidata":"https://www.wikidata.org/wiki/Q863695","display_name":"Bond length","level":3,"score":0.5851046442985535},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.5143331289291382},{"id":"https://openalex.org/C193547582","wikidata":"https://www.wikidata.org/wiki/Q911331","display_name":"Molecular geometry","level":3,"score":0.4907001256942749},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.42484793066978455},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.4192241430282593},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4100314676761627},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.407735675573349},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3831428289413452},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36123186349868774},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.3529929220676422},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.3218613862991333},{"id":"https://openalex.org/C2780378348","wikidata":"https://www.wikidata.org/wiki/Q25351438","display_name":"Ring (chemistry)","level":2,"score":0.27814167737960815},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.15952634811401367},{"id":"https://openalex.org/C112887158","wikidata":"https://www.wikidata.org/wiki/Q169324","display_name":"Hydrogen bond","level":3,"score":0.13937535881996155},{"id":"https://openalex.org/C115624301","wikidata":"https://www.wikidata.org/wiki/Q895901","display_name":"Crystal structure","level":2,"score":0.07695990800857544},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1002/(sici)1096-987x(199605)17:7<910::aid-jcc14>3.0.co;2-e","is_oa":false,"landing_page_url":"https://doi.org/10.1002/(sici)1096-987x(199605)17:7<910::aid-jcc14>3.0.co;2-e","pdf_url":null,"source":{"id":"https://openalex.org/S21117631","display_name":"Journal of Computational Chemistry","issn_l":"0192-8651","issn":["0192-8651","1096-987X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Chemistry","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322616","display_name":"Mitsubishi Foundation","ror":"https://ror.org/02y2f3e22"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1590020374","https://openalex.org/W1969757076","https://openalex.org/W1979046104","https://openalex.org/W1982414593","https://openalex.org/W1985124981","https://openalex.org/W1988832667","https://openalex.org/W1995068394","https://openalex.org/W1997310186","https://openalex.org/W2001130582","https://openalex.org/W2004078455","https://openalex.org/W2006640104","https://openalex.org/W2009555898","https://openalex.org/W2010203680","https://openalex.org/W2036325594","https://openalex.org/W2040838859","https://openalex.org/W2046923117","https://openalex.org/W2051554488","https://openalex.org/W2054063694","https://openalex.org/W2055798124","https://openalex.org/W2057691786","https://openalex.org/W2057993818","https://openalex.org/W2061346531","https://openalex.org/W2061822610","https://openalex.org/W2078865456","https://openalex.org/W2079589162","https://openalex.org/W2083827956","https://openalex.org/W2089463116","https://openalex.org/W2095408648","https://openalex.org/W2138199172","https://openalex.org/W2139259254","https://openalex.org/W2162166182","https://openalex.org/W2312753781","https://openalex.org/W4242602028"],"related_works":["https://openalex.org/W1967066158","https://openalex.org/W2412630713","https://openalex.org/W2015963974","https://openalex.org/W2038161911","https://openalex.org/W2023671350","https://openalex.org/W2124301831","https://openalex.org/W2154242023","https://openalex.org/W2006671591","https://openalex.org/W2061413550","https://openalex.org/W2086570862"],"abstract_inverted_index":{"The":[0],"computational":[1],"algorithm":[2,51],"that":[3,59,64],"works":[4],"in":[5],"the":[6,36],"coordinate":[7],"space":[8],"of":[9,40,47,70,79,88],"dihedral":[10,24],"angles":[11,17,25],"(i.e.,":[12],"bond":[13,16],"lengths":[14],"and":[15,21],"are":[18,26,65],"kept":[19],"fixed":[20],"only":[22],"rotatable":[23],"treated":[27],"as":[28],"independent":[29],"variables)":[30],"is":[31,52],"extended":[32],"to":[33,54],"deal":[34],"with":[35,67],"pseudorotational":[37],"m":[38],"otion":[39],"furanose":[41],"rings":[42],"by":[43,94],"introducing":[44],"a":[45,55,86],"variable":[46],"pseudorotation.":[48],"Then,":[49],"this":[50],"applied":[53],"distance":[56],"geometry":[57],"calculation":[58],"generates":[60,76],"three-dimensional":[61],"(3D)":[62],"structures":[63,78],"consistent":[66],"given":[68],"constraints":[69],"interatomic":[71],"distances.":[72],"This":[73],"method":[74],"efficiently":[75],"3D":[77],"an":[80],"RNA":[81],"hairpin":[82],"loop":[83],"which":[84],"satisfy":[85],"set":[87],"experimental":[89],"NMR":[90],"data.":[91],"\u00a9":[92],"1996":[93],"John":[95],"Wiley":[96],"&":[97],"Sons,":[98],"Inc.":[99]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}