{"id":"https://openalex.org/W91136319","doi":null,"title":"[Identification of atypical mycobacteria isolated from clinical specimens by line probe assay (LIPA)].","display_name":"[Identification of atypical mycobacteria isolated from clinical specimens by line probe assay (LIPA)].","publication_year":2007,"publication_date":"2007-10-01","ids":{"openalex":"https://openalex.org/W91136319","mag":"91136319","pmid":"https://pubmed.ncbi.nlm.nih.gov/18173068"},"language":"tr","primary_location":{"id":"pmid:18173068","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18173068","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mikrobiyoloji bulteni","raw_type":"English Abstract"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066103312","display_name":"Can Bi\u00e7men","orcid":"https://orcid.org/0000-0001-5392-570X","observed_orcids":["https://orcid.org/0000-0001-5392-570X"]},"institutions":[{"id":"https://openalex.org/I4210133502","display_name":"HSU Dr. Suat Seren Chest Diseases and Chest Surgery Training and Research Hospital","ror":"https://ror.org/03mq2kf66","country_code":"TR","type":"healthcare","lineage":["https://openalex.org/I4210133502"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Can Bi\u00e7men","raw_affiliation_strings":["Dr. Suat Seren G\u00f6\u011f\u00fcs Hastaliklarl ve Cerrahisi E\u011fitim ve Ara\u015ftirma Hastanesi, Mikrobiyoloji Laboratuvari, Izmir. cbicmen@yahoo.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dr. Suat Seren G\u00f6\u011f\u00fcs Hastaliklarl ve Cerrahisi E\u011fitim ve Ara\u015ftirma Hastanesi, Mikrobiyoloji Laboratuvari, Izmir. cbicmen@yahoo.com","institution_ids":["https://openalex.org/I4210133502"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038612747","display_name":"Meral Co\u015fkun","orcid":"https://orcid.org/0000-0001-7471-8873","observed_orcids":["https://orcid.org/0000-0001-7471-8873"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Meral Co\u015fkun","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060530160","display_name":"Ayriz Tuba G\u00fcnd\u00fcz","orcid":"https://orcid.org/0000-0001-5133-7250","observed_orcids":["https://orcid.org/0000-0001-5133-7250"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ayriz T G\u00fcnd\u00fcz","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017233540","display_name":"G\u00fcne\u015f \u015eenol","orcid":"https://orcid.org/0000-0002-1027-7578","observed_orcids":["https://orcid.org/0000-0002-1027-7578"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"G\u00fcne\u015f Senol","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021755860","display_name":"Ali Kadri \u00c7\u0131rak","orcid":"https://orcid.org/0000-0002-0137-1124","observed_orcids":["https://orcid.org/0000-0002-0137-1124"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A Kadri Cirak","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5005139913","display_name":"G\u00fcltekin Tibet","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"G\u00fcltekin Tibet","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.6084,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.69845179,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":93},"biblio":{"volume":"41","issue":"4","first_page":"503","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.002300000051036477,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nontuberculous-mycobacteria","display_name":"nontuberculous mycobacteria","score":0.9409999847412109},{"id":"https://openalex.org/keywords/line-probe-assay","display_name":"line probe assay","score":0.8420000076293945},{"id":"https://openalex.org/keywords/mycobacterium-szulgai","display_name":"Mycobacterium szulgai","score":0.781000018119812},{"id":"https://openalex.org/keywords/mycobacterium-intracellulare","display_name":"Mycobacterium intracellulare","score":0.828000009059906},{"id":"https://openalex.org/keywords/mycobacterium-avium-complex","display_name":"Mycobacterium avium complex","score":0.9369999766349792},{"id":"https://openalex.org/keywords/mycobacterium-gordonae","display_name":"Mycobacterium gordonae","score":0.8899999856948853},{"id":"https://openalex.org/keywords/mycobacterium-kansasii","display_name":"Mycobacterium kansasii","score":0.9679999947547913},{"id":"https://openalex.org/keywords/mycobacterium-simiae","display_name":"Mycobacterium simiae","score":0.8489999771118164},{"id":"https://openalex.org/keywords/mycobacterium-scrofulaceum","display_name":"Mycobacterium scrofulaceum","score":0.9860000014305115},{"id":"https://openalex.org/keywords/mycobacterium-avium-intracellulare-complex","display_name":"Mycobacterium avium-intracellulare complex","score":0.6539999842643738}],"concepts":[{"id":"https://openalex.org/C2780374374","wikidata":"https://www.wikidata.org/wiki/Q194309","display_name":"Mycobacterium","level":3,"score":0.6483548283576965},{"id":"https://openalex.org/C2776301714","wikidata":"https://www.wikidata.org/wiki/Q259346","display_name":"Sputum","level":3,"score":0.6222318410873413},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.6009849309921265},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.5976110696792603},{"id":"https://openalex.org/C2778679867","wikidata":"https://www.wikidata.org/wiki/Q1881705","display_name":"Nontuberculous mycobacteria","level":4,"score":0.5854678153991699},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5755148530006409},{"id":"https://openalex.org/C2777961210","wikidata":"https://www.wikidata.org/wiki/Q927148","display_name":"Bronchoalveolar lavage","level":3,"score":0.5170934200286865},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.5015027523040771},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.477520614862442},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.4466187059879303},{"id":"https://openalex.org/C78063203","wikidata":"https://www.wikidata.org/wiki/Q3062596","display_name":"DNA extraction","level":4,"score":0.43909335136413574},{"id":"https://openalex.org/C2779790121","wikidata":"https://www.wikidata.org/wiki/Q5779917","display_name":"Mycobacterium tuberculosis complex","level":4,"score":0.42642635107040405},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2377350926399231},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.18279707431793213},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.1654825508594513},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08996737003326416},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009165","descriptor_name":"Mycobacterium Infections, Nontuberculous","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D009165","descriptor_name":"Mycobacterium Infections, Nontuberculous","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009170","descriptor_name":"Nontuberculous Mycobacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009170","descriptor_name":"Nontuberculous Mycobacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009170","descriptor_name":"Nontuberculous Mycobacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D020133","descriptor_name":"Reverse Transcriptase Polymerase Chain Reaction","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"pmid:18173068","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18173068","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mikrobiyoloji bulteni","raw_type":"English Abstract"},{"id":"mag:91136319","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18173068","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"PubMed","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.9391000270843506}],"study_designs":[{"display_name":"Observational Study","id":"https://openalex.org/study-designs/observational-study"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2083448470","https://openalex.org/W2114888478","https://openalex.org/W2142006729","https://openalex.org/W2171820209","https://openalex.org/W2133294910","https://openalex.org/W2068292963","https://openalex.org/W3136909730","https://openalex.org/W2415008044","https://openalex.org/W6987812533","https://openalex.org/W2158001462"],"abstract_inverted_index":{"The":[0,227],"aim":[1],"of":[2,8,15,45,75,131,140,164,268,305,326,346],"this":[3],"study":[4,170],"was":[5,78,100,199,312],"the":[6,55,62,73,104,118,129,132,162,224,289,303,324,365],"identification":[7,319,345],"atypical":[9,76,196,210,296,306,347],"mycobacteria":[10,77,297,307],"isolated":[11,308],"from":[12,49,178],"various":[13],"samples":[14,47,63,85,183,221,270],"patients":[16,51,203,208,231],"prediagnosed":[17],"as":[18,233,281,294],"tuberculosis":[19],"between":[20],"November":[21],"2004":[22],"and":[23,59,72,134,150,263,276,288,337,349],"June":[24],"2006":[25],"by":[26,89,102,274,284,364],"a":[27,301],"commercial":[28,142],"polymerase":[29],"chain":[30],"reaction":[31],"(PCR)":[32],"based":[33],"reverse":[34],"hybridization":[35],"kit":[36,147],"(INNO-LiPA":[37],"Mycobacteria":[38],"v2,":[39],"Innogenetics":[40],"NV,":[41],"Belgium).":[42],"A":[43],"total":[44],"21,060":[46],"obtained":[48],"9660":[50],"were":[52,64,114,159,176,232,272,279,292,340,361],"included":[53],"to":[54,128,191,314],"study.":[56],"After":[57,95],"decontamination":[58],"homogenization":[60],"processes,":[61],"cultivated":[65],"in":[66,80,201,214,218,309,328,343,357],"automated":[67],"MGIT":[68],"Bactec":[69,91],"960":[70],"system":[71],"diagnosis":[74],"performed":[79,101],"4532":[81],"(21.5%)":[82],"culture":[83],"positive":[84],"with":[86,117],"NAP":[87,334],"test":[88,353],"using":[90,103],"460":[92],"TB":[93],"system.":[94],"DNA":[96],"isolation,":[97],"PCR":[98,112],"method":[99],"primers":[105],"specific":[106,120],"for":[107,121,161,323],"mycobacterial":[108,166,197,211,358],"16S-23S":[109],"spacer":[110],"region.":[111],"products":[113],"then":[115],"hybridized":[116],"probes":[119],"Mycobacterium":[122,149,152,174,286,339,351],"species":[123,175,228],"on":[124,204],"nitrocellulose":[125],"strips":[126],"according":[127],"recommendations":[130],"manufacturer":[133],"evaluated.":[135],"Additionally,":[136],"two":[137,291],"different":[138,173,205],"versions":[139],"another":[141],"Line":[143],"Probe":[144],"Assay":[145],"(LiPA)":[146],"[GenoType":[148],"GenoType":[151,277,285,338,350],"AS":[153,287,352],"(Additional":[154],"Species),":[155],"Hain":[156],"Lifescience,":[157],"Germany]":[158],"used":[160],"detection":[163],"unidentified":[165,273,295],"strains.":[167],"In":[168,331],"our":[169,310],"period,":[171],"10":[172],"identified":[177,280,363],"44":[179],"(1%)":[180],"respiratory":[181],"tract":[182],"(sputum,":[184],"bronchial":[185],"aspiration":[186],"fluid,":[187],"bronchoalveolar":[188],"lavage)":[189],"belonging":[190],"30":[192],"patients.":[193,330],"While":[194],"repeated":[195],"growth":[198,212],"found":[200,293],"13":[202],"days,":[206],"17":[207],"showed":[209],"only":[213],"one":[215],"sample":[216],"or":[217],"separate":[219],"multiple":[220],"taken":[222],"within":[223],"same":[225],"day.":[226],"distribution":[229],"among":[230],"follows;":[234],"M.":[235,240,243,247,251,254,257,260,264,282],"fortuitum-M.":[236],"peregrinum":[237],"complex":[238,245,249],"(n=5),":[239],"intracellulare":[241],"(n=4),":[242,246,250,253],"avium":[244],"chelonae":[248],"gordonae":[252],"kansasii":[255],"(n=3),":[256],"szulgailintermedium":[258],"(n=2),":[259],"simiae":[261],"(n=1)":[262],"scrofulaceum":[265],"(n=1).":[266],"Two":[267],"four":[269],"which":[271,360],"INNO-LiPA":[275,336],"MTBC":[278],"szulgai/intermedium":[283],"other":[290],"(Mycobacterium":[298],"spp.).":[299],"As":[300],"result,":[302],"frequency":[304],"hospital":[311],"thought":[313],"be":[315,321,355],"low,":[316],"however,":[317],"species-level":[318],"might":[320],"useful":[322,341],"planning":[325],"therapy":[327],"such":[329],"addition,":[332],"after":[333],"test,":[335],"tests":[342],"microbiological":[344],"mycobacteria,":[348],"could":[354],"applied":[356],"strains":[359],"not":[362],"former":[366],"assays.":[367]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
