{"id":"https://openalex.org/W896744467","doi":"https://doi.org/10.1128/microbiolspec.mdna3-0036-2014","title":"Tyrosine Recombinase Retrotransposons and Transposons","display_name":"Tyrosine Recombinase Retrotransposons and Transposons","publication_year":2015,"publication_date":"2015-04-02","ids":{"openalex":"https://openalex.org/W896744467","doi":"https://doi.org/10.1128/microbiolspec.mdna3-0036-2014","mag":"896744467","pmid":"https://pubmed.ncbi.nlm.nih.gov/26104693"},"language":"en","primary_location":{"id":"doi:10.1128/microbiolspec.mdna3-0036-2014","doi":"https://doi.org/10.1128/microbiolspec.mdna3-0036-2014","is_oa":false,"landing_page_url":"https://doi.org/10.1128/microbiolspec.mdna3-0036-2014","pdf_url":null,"source":{"id":"https://openalex.org/S2764766708","display_name":"Microbiology Spectrum","issn_l":"2165-0497","issn":["2165-0497"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Spectrum","raw_type":"journal-article"},"volume":null,"type":"review","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029201423","display_name":"Russell T. M. Poulter","orcid":"https://orcid.org/0000-0001-5848-646X","observed_orcids":["https://orcid.org/0000-0001-5848-646X"]},"institutions":[{"id":"https://openalex.org/I80281795","display_name":"University of Otago","ror":"https://ror.org/01jmxt844","country_code":"NZ","type":"education","lineage":["https://openalex.org/I80281795"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Russell T. M. Poulter","raw_affiliation_strings":["Department of Biochemistry, University of Otago, Dunedin 9054, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Otago, Dunedin 9054, New Zealand","institution_ids":["https://openalex.org/I80281795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025964447","display_name":"Margaret I. Butler","orcid":"https://orcid.org/0000-0001-6863-3961","observed_orcids":["https://orcid.org/0000-0001-6863-3961"]},"institutions":[{"id":"https://openalex.org/I80281795","display_name":"University of Otago","ror":"https://ror.org/01jmxt844","country_code":"NZ","type":"education","lineage":["https://openalex.org/I80281795"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Margi I. Butler","raw_affiliation_strings":["Department of Biochemistry, University of Otago, Dunedin 9054, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Otago, Dunedin 9054, New Zealand","institution_ids":["https://openalex.org/I80281795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I80281795"],"apc_list":{"value":2500,"currency":"USD","value_usd":2500},"apc_paid":null,"fwci":0.2985,"has_fulltext":false,"cited_by_count":43,"citation_normalized_percentile":{"value":0.29190904,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"3","issue":"2","first_page":"MDNA3","last_page":"0036"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13385","display_name":"Infectious Diseases and Mycology","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tyrosine-recombinases","display_name":"tyrosine recombinases","score":0.9340000152587891},{"id":"https://openalex.org/keywords/retrotransposons","display_name":"retrotransposons","score":0.984000027179718},{"id":"https://openalex.org/keywords/dna-transposons","display_name":"DNA transposons","score":0.9089999794960022},{"id":"https://openalex.org/keywords/site-specific-recombination","display_name":"site-specific recombination","score":0.8489999771118164},{"id":"https://openalex.org/keywords/transposable-elements","display_name":"transposable elements","score":0.5350000262260437},{"id":"https://openalex.org/keywords/eukaryotic-evolution","display_name":"eukaryotic evolution","score":0.7630000114440918},{"id":"https://openalex.org/keywords/dictyostelium-discoideum","display_name":"Dictyostelium discoideum","score":0.9620000123977661},{"id":"https://openalex.org/keywords/oomycete","display_name":"oomycete","score":0.6769999861717224}],"concepts":[{"id":"https://openalex.org/C7029365","wikidata":"https://www.wikidata.org/wiki/Q413988","display_name":"Retrotransposon","level":5,"score":0.9593133926391602},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8361750841140747},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.6843388080596924},{"id":"https://openalex.org/C102414288","wikidata":"https://www.wikidata.org/wiki/Q1172461","display_name":"Recombinase","level":4,"score":0.6688719987869263},{"id":"https://openalex.org/C156719811","wikidata":"https://www.wikidata.org/wiki/Q28774","display_name":"Reverse transcriptase","level":4,"score":0.6182414889335632},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.602451741695404},{"id":"https://openalex.org/C199491388","wikidata":"https://www.wikidata.org/wiki/Q1869477","display_name":"Long terminal repeat","level":4,"score":0.49634820222854614},{"id":"https://openalex.org/C2910803801","wikidata":"https://www.wikidata.org/wiki/Q28774","display_name":"RNA-Directed DNA Polymerase","level":5,"score":0.412728488445282},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.34294772148132324},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21591094136238098},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.19506990909576416},{"id":"https://openalex.org/C156695909","wikidata":"https://www.wikidata.org/wiki/Q3373825","display_name":"Recombination","level":3,"score":0.09030190110206604}],"mesh":[{"descriptor_ui":"D004261","descriptor_name":"DNA Replication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045522","descriptor_name":"Recombinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1128/microbiolspec.mdna3-0036-2014","doi":"https://doi.org/10.1128/microbiolspec.mdna3-0036-2014","is_oa":false,"landing_page_url":"https://doi.org/10.1128/microbiolspec.mdna3-0036-2014","pdf_url":null,"source":{"id":"https://openalex.org/S2764766708","display_name":"Microbiology Spectrum","issn_l":"2165-0497","issn":["2165-0497"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Spectrum","raw_type":"journal-article"},{"id":"pmid:26104693","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26104693","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology spectrum","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W221200352","https://openalex.org/W1773018645","https://openalex.org/W1832207516","https://openalex.org/W1963613748","https://openalex.org/W1975954127","https://openalex.org/W1983754345","https://openalex.org/W1987555394","https://openalex.org/W1993161581","https://openalex.org/W1993548583","https://openalex.org/W2000650633","https://openalex.org/W2004504582","https://openalex.org/W2005748291","https://openalex.org/W2008837108","https://openalex.org/W2012687647","https://openalex.org/W2014124686","https://openalex.org/W2021754235","https://openalex.org/W2026345779","https://openalex.org/W2036760742","https://openalex.org/W2045402585","https://openalex.org/W2050228332","https://openalex.org/W2059524002","https://openalex.org/W2059864757","https://openalex.org/W2065340925","https://openalex.org/W2071038058","https://openalex.org/W2075148486","https://openalex.org/W2076491215","https://openalex.org/W2085854135","https://openalex.org/W2094332330","https://openalex.org/W2106389870","https://openalex.org/W2106736840","https://openalex.org/W2110302844","https://openalex.org/W2117434487","https://openalex.org/W2123127913","https://openalex.org/W2126293366","https://openalex.org/W2129170639","https://openalex.org/W2132207416","https://openalex.org/W2132632499","https://openalex.org/W2135907561","https://openalex.org/W2144343392","https://openalex.org/W2145034307","https://openalex.org/W2147348236","https://openalex.org/W2151892976","https://openalex.org/W2157740180","https://openalex.org/W2158892757","https://openalex.org/W2161620968","https://openalex.org/W2169684924","https://openalex.org/W4247540240"],"related_works":["https://openalex.org/W2144343392","https://openalex.org/W1975954127","https://openalex.org/W4241832382","https://openalex.org/W2151892976","https://openalex.org/W2126293366","https://openalex.org/W2094332330","https://openalex.org/W7100797076","https://openalex.org/W2158892757","https://openalex.org/W7098657473","https://openalex.org/W2592347086"],"abstract_inverted_index":{"Retrotransposons":[0],"carrying":[1],"tyrosine":[2,12,145],"recombinases":[3],"(YR)":[4],"are":[5,29,173],"widespread":[6],"in":[7,160,215],"eukaryotes.":[8,219],"The":[9,26,110],"first":[10],"described":[11],"recombinase":[13],"mobile":[14],"element,":[15],"DIRS1,":[16],"is":[17,45],"a":[18,59,79,153,192,203,211],"retroelement":[19],"from":[20,70,188],"the":[21,49,55,102,107,170,178,184,189,198,216],"slime":[22],"mold":[23],"Dictyostelium":[24],"discoideum.":[25],"YR":[27,63,93,128,179,185,194],"elements":[28,69],"bordered":[30],"by":[31],"terminal":[32],"repeats":[33],"related":[34,174],"to":[35,47,175],"their":[36],"replication":[37],"via":[38],"free":[39],"circular":[40],"dsDNA":[41],"intermediates.":[42],"Site-specific":[43],"recombination":[44],"believed":[46],"integrate":[48],"circle":[50],"without":[51],"creating":[52],"duplications":[53],"of":[54,62,82,122,138,177,191,202,218],"target":[56],"sites.":[57],"Recently":[58],"large":[60],"number":[61],"retrotransposons":[64,94,186],"have":[65,157,208],"been":[66,158],"described,":[67],"including":[68,84],"fungi":[71,163],"(mucorales":[72],"and":[73,78,91,106,127,130,164,197],"basidiomycetes),":[74],"plants":[75],"(green":[76],"algae)":[77],"wide":[80],"range":[81],"animals":[83],"nematodes,":[85],"insects,":[86],"sea":[87],"urchins,":[88],"fish,":[89],"amphibia":[90],"reptiles.":[92],"can":[95],"be":[96],"divided":[97],"into":[98],"three":[99,111],"major":[100],"groups:":[101],"DIRS":[103],"elements,":[104],"PAT-like":[105],"Ngaro":[108],"elements.":[109],"groups":[112],"form":[113],"distinct":[114],"clades":[115],"on":[116,120],"phylogenetic":[117],"trees":[118],"based":[119],"alignments":[121],"reverse":[123,154],"transcriptase/ribonuclease":[124],"H":[125],"(RT/RH)":[126],"sequences,":[129],"also":[131,143],"having":[132],"some":[133],"structural":[134],"distinctions.":[135],"A":[136],"group":[137],"eukaryote":[139],"DNA":[140,148,195],"transposons,":[141],"cryptons,":[142],"carry":[144],"recombinases.":[146],"These":[147],"transposons":[149],"do":[150],"not":[151],"encode":[152],"transcriptase.":[155],"They":[156],"detected":[159],"several":[161],"pathogenic":[162],"oomycetes.":[165],"Sequence":[166],"comparisons":[167],"suggest":[168,182],"that":[169,183],"crypton":[171],"YRs":[172],"those":[176],"retrotransposons.":[180],"We":[181],"arose":[187],"combination":[190],"crypton-like":[193],"transposon":[196],"RT/RH":[199],"encoding":[200],"sequence":[201],"retrotransposon.":[204],"This":[205],"acquisition":[206],"must":[207],"occurred":[209],"at":[210],"very":[212],"early":[213],"point":[214],"evolution":[217]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}