{"id":"https://openalex.org/W76875535","doi":null,"title":"IAA Biosynthesis in Brachypodium distachyon","display_name":"IAA Biosynthesis in Brachypodium distachyon","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W76875535","mag":"76875535"},"language":"en","primary_location":{"id":"pmh:oai:scholarworks.umass.edu:timbr_conf-1006","doi":null,"is_oa":false,"landing_page_url":"https://scholarworks.umass.edu/timbr_conf/2010/posters/6","pdf_url":null,"source":{"id":"https://openalex.org/S4306402240","display_name":"ScholarWorks@UMassAmherst (University of Massachusetts Amherst)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I24603500","host_organization_name":"University of Massachusetts Amherst","host_organization_lineage":["https://openalex.org/I24603500"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Conference on Cellulosic Biofuels","raw_type":"text"},"volume":null,"type":"conference-paper","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110407016","display_name":"Caroline Duffy","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Caroline Duffy","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5007724881","display_name":"Jennifer Normanly","orcid":"https://orcid.org/0000-0001-8232-7258","observed_orcids":["https://orcid.org/0000-0001-8232-7258"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jennifer Normanly","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00517152,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.0044999998062849045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/indole-3-acetic-acid-biosynthesis","display_name":"indole-3-acetic acid biosynthesis","score":0.9430000185966492},{"id":"https://openalex.org/keywords/brachypodium-distachyon","display_name":"Brachypodium distachyon","score":0.9509999752044678},{"id":"https://openalex.org/keywords/auxin","display_name":"auxin","score":0.9300000071525574},{"id":"https://openalex.org/keywords/anthranilate","display_name":"anthranilate","score":0.7519999742507935},{"id":"https://openalex.org/keywords/ortholog-identification","display_name":"ortholog identification","score":0.5630000233650208},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.7110000252723694},{"id":"https://openalex.org/keywords/root-and-shoot-development","display_name":"shoot and root development","score":0.8889999985694885},{"id":"https://openalex.org/keywords/pulse-labeling","display_name":"pulse labeling","score":0.5509999990463257},{"id":"https://openalex.org/keywords/second-generation-bioethanol","display_name":"cellulosic ethanol","score":0.7590000033378601},{"id":"https://openalex.org/keywords/energy-crops","display_name":"energy crops","score":0.8489999771118164}],"concepts":[{"id":"https://openalex.org/C2777911459","wikidata":"https://www.wikidata.org/wiki/Q2352209","display_name":"Brachypodium distachyon","level":4,"score":0.9040080308914185},{"id":"https://openalex.org/C2777749068","wikidata":"https://www.wikidata.org/wiki/Q157770","display_name":"Brachypodium","level":4,"score":0.6926939487457275},{"id":"https://openalex.org/C553450214","wikidata":"https://www.wikidata.org/wiki/Q851162","display_name":"Biosynthesis","level":3,"score":0.43030887842178345},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2816523611545563},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1468571126461029},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.08170941472053528},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.06600189208984375},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:scholarworks.umass.edu:timbr_conf-1006","doi":null,"is_oa":false,"landing_page_url":"https://scholarworks.umass.edu/timbr_conf/2010/posters/6","pdf_url":null,"source":{"id":"https://openalex.org/S4306402240","display_name":"ScholarWorks@UMassAmherst (University of Massachusetts Amherst)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I24603500","host_organization_name":"University of Massachusetts Amherst","host_organization_lineage":["https://openalex.org/I24603500"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Conference on Cellulosic Biofuels","raw_type":"text"},{"id":"mag:76875535","doi":null,"is_oa":false,"landing_page_url":"https://scholarworks.umass.edu/timbr_conf/2010/posters/6/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.7450000047683716}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7136082746","https://openalex.org/W1880962716","https://openalex.org/W2907648535","https://openalex.org/W2223716787","https://openalex.org/W1908904728","https://openalex.org/W2464319221","https://openalex.org/W2170552205","https://openalex.org/W2785050839","https://openalex.org/W2194289208","https://openalex.org/W7096221764"],"abstract_inverted_index":{"The":[0],"grass":[1],"Brachypodium":[2,68,91,98,121,250,268],"distachyon":[3],"has":[4,24,101,124],"been":[5,26,102,125],"identified":[6],"as":[7],"a":[8,114,228,263],"model":[9],"system":[10],"to":[11,29,46,76,109,113,225,255,262,270,283],"study":[12],"energy":[13],"crops":[14],"for":[15,66,87],"the":[16,36,105,147,186,202,267,277],"production":[17],"of":[18,116,141,149,194,204],"cellulosic":[19],"ethanol.":[20],"Brachypodium\u2019s":[21],"small":[22],"genome":[23,99,269],"recently":[25],"fully":[27],"sequenced":[28],"further":[30],"understand":[31],"its":[32],"biology.":[33],"By":[34],"profiling":[35],"auxin,":[37],"indole-3-acetic":[38],"acid":[39,188],"(IAA),":[40],"in":[41,50,57,95,164,178,200,234,273,281,288],"Brachypodium,":[42],"we":[43,52],"are":[44,246],"trying":[45],"establish":[47],"growth":[48,241,279],"conditions":[49,242,280],"which":[51],"can":[53],"detect":[54],"quantifiable":[55],"differences":[56,163,199,239,272],"IAA":[58,61,80,96,118,135,165,175,182,244,289],"levels.":[59],"Comparing":[60],"levels":[62,65,136,166,245],"with":[63],"transcript":[64,274],"putative":[67],"orthologs":[69,112],"(functionally":[70],"similar":[71,229],"genes":[72,82,92,285],"from":[73,185,249],"difference":[74],"species)":[75],"predicted":[77],"Arabidopsis":[78,117,179],"thaliana":[79],"biosynthetic":[81,119,176],"will":[83,207,222,251],"then":[84],"provide":[85],"evidence":[86],"or":[88],"against":[89],"specific":[90],"being":[93],"involved":[94,287],"synthesis.\\nThe":[97],"database":[100],"mined":[103],"using":[104,216],"BLAST":[106],"bioinformatics":[107],"algorithm":[108],"identify":[110,284],"potential":[111],"number":[115],"genes.":[120],"wildtype":[122],"tissue":[123],"grown":[126],"under":[127],"full":[128],"and":[129,134,143,154,169,220,243,260],"etiolated":[130],"(dark)":[131],"light":[132],"conditions,":[133],"determined":[137],"at":[138],"various":[139],"stages":[140,193],"root":[142,168],"shoot":[144,170],"development":[145],"through":[146],"use":[148],"solid":[150],"phase":[151],"extraction":[152],"(SPE)":[153],"gas":[155],"chromatograph-mass":[156],"spectrometry":[157],"(GC-MS)":[158],"methods.":[159],"Preliminary":[160],"results":[161],"show":[162],"between":[167,240,276],"tissue.":[171],"Previous":[172],"work":[173],"on":[174,209],"pathways":[177],"shows":[180],"that":[181],"is":[183,232],"derived":[184],"amino":[187],"tryptophan":[189],"(Trp)":[190],"during":[191],"early":[192],"development.":[195],"With":[196],"these":[197],"tentative":[198],"mind,":[201],"goals":[203],"this":[205],"project":[206],"focus":[208],"two":[210,278],"research":[211],"objectives.":[212],"First,":[213],"pulse-labeling":[214],"experiments":[215],"stable-isotope":[217],"labeled":[218],"Trp":[219],"anthranilate":[221],"be":[223,252],"conducted":[224],"determine":[226],"if":[227],"Trp-dependent":[230],"pathway":[231],"observed":[233],"Brachypodium.":[235],"Second,":[236],"once":[237],"significant":[238],"observed,":[247],"RNA":[248],"extracted,":[253],"converted":[254],"cDNA":[256],"via":[257],"reverse":[258],"transcription":[259],"applied":[261],"microarray":[264],"chip":[265],"containing":[266],"quantify":[271],"expression":[275],"order":[282],"potentially":[286],"biosynthesis.":[290]},"counts_by_year":[],"updated_date":"2026-10-13T10:08:12.033832","created_date":"2016-06-24T00:00:00"}