{"id":"https://openalex.org/W759999186","doi":"https://doi.org/10.31274/ans_air-180814-1317","title":"SNP Discovery and Genomic Architecture of Highly Inbred Leghorn and Fayoumi Chicken Breeds Using Whole Genome Resequencing","display_name":"SNP Discovery and Genomic Architecture of Highly Inbred Leghorn and Fayoumi Chicken Breeds Using Whole Genome Resequencing","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W759999186","doi":"https://doi.org/10.31274/ans_air-180814-1317","mag":"759999186"},"language":"en","primary_location":{"id":"doi:10.31274/ans_air-180814-1317","doi":"https://doi.org/10.31274/ans_air-180814-1317","is_oa":true,"landing_page_url":"https://doi.org/10.31274/ans_air-180814-1317","pdf_url":"https://www.iastatedigitalpress.com/air/article/id/5871/download/pdf/","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"report"},"volume":null,"type":"report","is_traditional":false,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.iastatedigitalpress.com/air/article/id/5871/download/pdf/","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005964039","display_name":"Damarius S. Fleming","orcid":"https://orcid.org/0000-0001-8377-0032","observed_orcids":["https://orcid.org/0000-0001-8377-0032"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Damarius S. Fleming","raw_affiliation_strings":["Iowa State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067290345","display_name":"James Eugene Koltes","orcid":"https://orcid.org/0000-0003-1897-5685","observed_orcids":["https://orcid.org/0000-0003-1897-5685"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James E. Koltes","raw_affiliation_strings":["Iowa State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112223831","display_name":"Eric R. Fritz-Waters","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric R. Fritz-Waters","raw_affiliation_strings":["Iowa State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037000551","display_name":"James Mark Reecy","orcid":"https://orcid.org/0000-0003-4602-0990","observed_orcids":["https://orcid.org/0000-0003-4602-0990"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James M. Reecy","raw_affiliation_strings":["Iowa State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085190560","display_name":"Susan Joy Lamont","orcid":"https://orcid.org/0000-0003-3974-4050","observed_orcids":["https://orcid.org/0000-0003-3974-4050"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan J. Lamont","raw_affiliation_strings":["Iowa State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Iowa State University","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13294","display_name":"Livestock and Poultry Management","score":0.0024999999441206455,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/leghorn-chickens","display_name":"Leghorn chickens","score":0.9309999942779541},{"id":"https://openalex.org/keywords/fayoumi-chicken","display_name":"Fayoumi chicken","score":1.0},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphisms","display_name":"single nucleotide polymorphisms","score":0.8190000057220459},{"id":"https://openalex.org/keywords/whole-genome-resequencing","display_name":"whole-genome resequencing","score":0.8130000233650208},{"id":"https://openalex.org/keywords/genetic-differentiation","display_name":"genetic differentiation","score":0.597000002861023},{"id":"https://openalex.org/keywords/oviposition","display_name":"oviposition","score":0.8579999804496765},{"id":"https://openalex.org/keywords/immune-response","display_name":"immune response","score":0.9490000009536743},{"id":"https://openalex.org/keywords/gene-set-enrichment-analysis","display_name":"gene set enrichment analysis","score":0.7549999952316284},{"id":"https://openalex.org/keywords/poultry-genetic-diversity","display_name":"poultry genetic diversity","score":0.6690000295639038},{"id":"https://openalex.org/keywords/disease-resistance","display_name":"disease resistance","score":0.6570000052452087}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8689640760421753},{"id":"https://openalex.org/C2776482104","wikidata":"https://www.wikidata.org/wiki/Q38829","display_name":"Breed","level":2,"score":0.7450900077819824},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.626305878162384},{"id":"https://openalex.org/C106934330","wikidata":"https://www.wikidata.org/wiki/Q1971873","display_name":"Trait","level":2,"score":0.5876034498214722},{"id":"https://openalex.org/C9287583","wikidata":"https://www.wikidata.org/wiki/Q5532883","display_name":"Genetic architecture","level":4,"score":0.5746031999588013},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.486129492521286},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47872281074523926},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.45124077796936035},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.42326921224594116},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.39305463433265686},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3808797001838684},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.27755311131477356},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.2530817985534668},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.13498565554618835},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.31274/ans_air-180814-1317","doi":"https://doi.org/10.31274/ans_air-180814-1317","is_oa":true,"landing_page_url":"https://doi.org/10.31274/ans_air-180814-1317","pdf_url":"https://www.iastatedigitalpress.com/air/article/id/5871/download/pdf/","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"report"},{"id":"pmh:oai:dr.lib.iastate.edu:20.500.12876/9173","doi":null,"is_oa":false,"landing_page_url":"https://dr.lib.iastate.edu/handle/20.500.12876/9173","pdf_url":null,"source":{"id":"https://openalex.org/S4377196104","display_name":"Iowa State University Digital Repository (Iowa State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I173911158","host_organization_name":"Iowa State University","host_organization_lineage":["https://openalex.org/I173911158"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"archive/lib.dr.iastate.edu/ans_air/vol661/iss1/59/R2996.pdf|||Sat Jan 15 01:03:04 UTC 2022","raw_type":"report"},{"id":"pmh:oai:lib.dr.iastate.edu:ans_air-2105","doi":null,"is_oa":false,"landing_page_url":"https://lib.dr.iastate.edu/ans_air/vol661/iss1/59","pdf_url":null,"source":{"id":"https://openalex.org/S4377196104","display_name":"Iowa State University Digital Repository (Iowa State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I173911158","host_organization_name":"Iowa State University","host_organization_lineage":["https://openalex.org/I173911158"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Animal Industry Report","raw_type":"text"}],"best_oa_location":{"id":"doi:10.31274/ans_air-180814-1317","doi":"https://doi.org/10.31274/ans_air-180814-1317","is_oa":true,"landing_page_url":"https://doi.org/10.31274/ans_air-180814-1317","pdf_url":"https://www.iastatedigitalpress.com/air/article/id/5871/download/pdf/","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"report"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.991100013256073,"display_name":"Zero hunger"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G29413528","display_name":null,"funder_award_id":"NRSP-8","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W759999186.pdf","grobid_xml":"https://content.openalex.org/works/W759999186.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2536191516","https://openalex.org/W2513115480","https://openalex.org/W6958421206","https://openalex.org/W6958745080","https://openalex.org/W4409590618","https://openalex.org/W2146180200","https://openalex.org/W2754901788","https://openalex.org/W3101172290","https://openalex.org/W7204991204","https://openalex.org/W2099564576"],"abstract_inverted_index":{"Advances":[0],"in":[1,67,99],"the":[2,56,60,78,81,95,100,104,126,132,160,192],"use":[3,66],"of":[4,31,44,77,80,108,129,199],"next":[5],"generation":[6],"sequencing":[7],"(NGS)":[8],"and":[9,47,62,71,103,111,149,162,169,181,191],"ability":[10,46],"to":[11,25,54,91,118,135,166,185],"pool":[12],"individuals":[13],"into":[14,137],"groups":[15],"that":[16,196],"represent":[17],"distinct":[18],"livestock":[19],"populations":[20,164],"has":[21],"made":[22],"it":[23],"possible":[24],"examine":[26],"trait":[27],"differences":[28,58],"between":[29,59,94,131,154],"breeds":[30,34,64,83],"chicken.":[32],"The":[33,50],"examined":[35,153],"are":[36,175,197],"very":[37],"divergent":[38],"when":[39],"compared":[40],"on":[41,187],"their":[42],"history":[43],"laying":[45,110],"immune":[48,113,144,167],"response.":[49],"long-term":[51],"objective":[52],"is":[53],"understand":[55],"genetic":[57,96,194],"Leghorn":[61,163],"Fayoumi":[63,161],"for":[65,143,151,157],"developing":[68],"more":[69,200],"productive":[70],"disease":[72],"resistant":[73],"chickens.":[74],"Statistical":[75],"testing":[76],"sequence":[79],"two":[82,121],"along":[84],"with":[85,140,177],"Gene":[86],"set":[87],"enrichment":[88],"analysis":[89],"(GSEA)":[90],"make":[92],"connections":[93],"variation":[97],"seen":[98],"NGS":[101],"data":[102],"breed":[105,179],"specific":[106,188],"traits":[107],"egg":[109],"heightened":[112],"response":[114],"can":[115],"be":[116],"used":[117],"characterize":[119],"these":[120],"breeds.":[122],"Genetic":[123],"terms":[124,141],"having":[125],"highest":[127],"level":[128],"differentiation":[130],"lines":[133],"appear":[134],"group":[136],"metabolic":[138],"processes,":[139],"over-enriched":[142],"system":[145],"process,":[146],"sexual":[147],"reproduction,":[148],"growth":[150],"variants":[152],"lines.":[155],"Terms":[156],"functions":[158],"within":[159],"aligned":[165],"function":[168],"reproductive":[170],"function,":[171],"respectively.":[172],"These":[173],"results":[174],"consistent":[176],"known":[178],"phenotypes":[180],"provide":[182],"a":[183],"means":[184],"focus":[186],"DNA":[189],"variations":[190],"birds\u2019":[193],"diversity":[195],"potentially":[198],"commercial":[201],"importance.":[202]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}
