{"id":"https://openalex.org/W756649930","doi":"https://doi.org/10.1007/s00335-015-9573-z","title":"MouseMine: a new data warehouse for MGI","display_name":"MouseMine: a new data warehouse for MGI","publication_year":2015,"publication_date":"2015-06-19","ids":{"openalex":"https://openalex.org/W756649930","doi":"https://doi.org/10.1007/s00335-015-9573-z","mag":"756649930","pmid":"https://pubmed.ncbi.nlm.nih.gov/26092688","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4534495"},"language":"en","primary_location":{"id":"doi:10.1007/s00335-015-9573-z","doi":"https://doi.org/10.1007/s00335-015-9573-z","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s00335-015-9573-z","pdf_url":"https://link.springer.com/content/pdf/10.1007/s00335-015-9573-z.pdf","source":{"id":"https://openalex.org/S197264859","display_name":"Mammalian Genome","issn_l":"0938-8990","issn":["0938-8990","1432-1777"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mammalian Genome","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s00335-015-9573-z.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012159998","display_name":"Howie Motenko","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. Motenko","raw_affiliation_strings":["The Jackson Laboratory, Bar Harbor, ME, 04609, USA","The Jackson Laboratory, Bar Harbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME, 04609, USA","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090619305","display_name":"Steven B. Neuhauser","orcid":"https://orcid.org/0000-0002-2993-9324","observed_orcids":["https://orcid.org/0000-0002-2993-9324"]},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. B. Neuhauser","raw_affiliation_strings":["The Jackson Laboratory, Bar Harbor, ME, 04609, USA","The Jackson Laboratory, Bar Harbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME, 04609, USA","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":null,"display_name":"M. O\u2019Keefe","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. O\u2019Keefe","raw_affiliation_strings":["The Jackson Laboratory, Bar Harbor, ME, 04609, USA","The MITRE Corporation, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME, 04609, USA","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The MITRE Corporation, Boston, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062064598","display_name":"Joel E. Richardson","orcid":"https://orcid.org/0000-0003-3342-5753","observed_orcids":["https://orcid.org/0000-0003-3342-5753"]},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. E. Richardson","raw_affiliation_strings":["The Jackson Laboratory, Bar Harbor, ME, 04609, USA","The Jackson Laboratory, Bar Harbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME, 04609, USA","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, USA","institution_ids":["https://openalex.org/I4210115256"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5062064598"],"corresponding_institution_ids":["https://openalex.org/I4210115256"],"apc_list":{"value":3890,"currency":"USD","value_usd":3890},"apc_paid":{"value":3890,"currency":"USD","value_usd":3890},"fwci":5.7849,"has_fulltext":true,"cited_by_count":127,"citation_normalized_percentile":{"value":0.97302993,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"26","issue":"7-8","first_page":"325","last_page":"330"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.3483999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.3483999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.22509999573230743,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.2054000049829483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-warehouse","display_name":"data warehouse","score":0.753000020980835},{"id":"https://openalex.org/keywords/mouse-genome-informatics","display_name":"Mouse Genome Informatics","score":0.9789999723434448},{"id":"https://openalex.org/keywords/intermine","display_name":"InterMine","score":0.9679999947547913},{"id":"https://openalex.org/keywords/web-services","display_name":"web services","score":0.6290000081062317},{"id":"https://openalex.org/keywords/model-organism-databases","display_name":"model organism databases","score":0.8339999914169312},{"id":"https://openalex.org/keywords/bioinformatics-data-integration","display_name":"bioinformatics data integration","score":0.6150000095367432}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7369948029518127},{"id":"https://openalex.org/C47042493","wikidata":"https://www.wikidata.org/wiki/Q265799","display_name":"Human genetics","level":3,"score":0.6368095874786377},{"id":"https://openalex.org/C50416739","wikidata":"https://www.wikidata.org/wiki/Q181623","display_name":"Warehouse","level":2,"score":0.4753686785697937},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.43160688877105713},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3289286494255066},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2870369553565979},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21256369352340698},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.17303672432899475},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.1506175398826599},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11211207509040833},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.08600842952728271}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1007/s00335-015-9573-z","doi":"https://doi.org/10.1007/s00335-015-9573-z","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s00335-015-9573-z","pdf_url":"https://link.springer.com/content/pdf/10.1007/s00335-015-9573-z.pdf","source":{"id":"https://openalex.org/S197264859","display_name":"Mammalian Genome","issn_l":"0938-8990","issn":["0938-8990","1432-1777"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mammalian Genome","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3517242","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4534495","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4534495","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4534495","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mamm Genome","raw_type":"Text"},{"id":"pmid:26092688","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26092688","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mammalian genome : official journal of the International Mammalian Genome Society","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.818.9542","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.818.9542","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/10/bc/335_2015_Article_9573.PMC4534495.pdf","raw_type":"text"},{"id":"pmh:oai:mouseion.jax.org:stfb2015-1139","doi":null,"is_oa":false,"landing_page_url":"https://mouseion.jax.org/stfb2015/142","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2015","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1007/s00335-015-9573-z","doi":"https://doi.org/10.1007/s00335-015-9573-z","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s00335-015-9573-z","pdf_url":"https://link.springer.com/content/pdf/10.1007/s00335-015-9573-z.pdf","source":{"id":"https://openalex.org/S197264859","display_name":"Mammalian Genome","issn_l":"0938-8990","issn":["0938-8990","1432-1777"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mammalian Genome","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G3381669225","display_name":null,"funder_award_id":"HG004834","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3446679583","display_name":null,"funder_award_id":"HD062499","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G4725284076","display_name":null,"funder_award_id":"HD062499","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6044225711","display_name":null,"funder_award_id":"CA089713","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7977818326","display_name":"InterMOD: integrated data and tools to support model organism research","funder_award_id":"R01HG004834","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G9000868887","display_name":"Mouse Models of Human Cancer Database","funder_award_id":"R01CA089713","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G9000870510","display_name":"Gene Expression Database for Mouse Development","funder_award_id":"P41HD062499","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G9000917281","display_name":"Cancer Center Support (CORE) Grant","funder_award_id":"P30CA034196","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W756649930.pdf","grobid_xml":"https://content.openalex.org/works/W756649930.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2012896813","https://openalex.org/W2072272271","https://openalex.org/W2090559761","https://openalex.org/W2124286758","https://openalex.org/W2136887407","https://openalex.org/W2153804545","https://openalex.org/W2170648600","https://openalex.org/W2171018484"],"related_works":["https://openalex.org/W2559861862","https://openalex.org/W10535609","https://openalex.org/W2126010837","https://openalex.org/W4393184735","https://openalex.org/W2162058580","https://openalex.org/W179420201","https://openalex.org/W4255946133","https://openalex.org/W2624988670","https://openalex.org/W2121108975","https://openalex.org/W2803355270"],"abstract_inverted_index":{"MouseMine":[0,22,68],"(www.mousemine.org)":[1],"is":[2,69],"a":[3,46,56,71,74,111],"new":[4,63],"data":[5,10,61,79,98,106],"warehouse":[6],"for":[7,125],"accessing":[8],"mouse":[9],"from":[11,37],"Mouse":[12],"Genome":[13],"Informatics":[14],"(MGI).":[15],"Based":[16],"on":[17,82,97],"the":[18,30,123,129],"InterMine":[19],"software":[20],"framework,":[21],"supports":[23],"powerful":[24],"query,":[25],"reporting,":[26],"and":[27,34,45,64,95,121],"analysis":[28],"capabilities,":[29],"ability":[31],"to":[32,103,114],"save":[33],"combine":[35],"results":[36],"different":[38],"queries,":[39],"easy":[40],"integration":[41,127],"into":[42,128],"larger":[43],"workflows,":[44],"comprehensive":[47],"Web":[48],"Services":[49],"layer.":[50],"Through":[51],"MouseMine,":[52,115],"users":[53],"can":[54],"access":[55],"significant":[57],"portion":[58],"of":[59,73,77,118],"MGI":[60,130],"in":[62],"useful":[65],"ways.":[66],"Importantly,":[67],"also":[70],"member":[72],"growing":[75],"community":[76],"online":[78],"resources":[80],"based":[81],"InterMine,":[83],"including":[84],"those":[85],"established":[86],"by":[87],"other":[88],"model":[89],"organism":[90],"databases.":[91],"Adopting":[92],"common":[93],"interfaces":[94],"collaborating":[96],"representation":[99],"standards":[100],"are":[101],"critical":[102],"fostering":[104],"cross-species":[105],"analysis.":[107],"This":[108],"paper":[109],"presents":[110,116],"general":[112],"introduction":[113],"examples":[117],"its":[119],"use,":[120],"discusses":[122],"potential":[124],"further":[126],"interface.":[131]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":19},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":3}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}